Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GIG89_RS01310 | Genome accession | NZ_CP045924 |
| Coordinates | 267705..268094 (+) | Length | 129 a.a. |
| NCBI ID | WP_019291355.1 | Uniprot ID | A0A252CCZ8 |
| Organism | Lactococcus petauri strain CF11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 267705..274546 | 267705..268094 | within | 0 |
Gene organization within MGE regions
Location: 267705..274546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIG89_RS01310 | ssbB | 267705..268094 (+) | 390 | WP_019291355.1 | single-stranded DNA-binding protein | Machinery gene |
| GIG89_RS01315 | - | 268151..268681 (+) | 531 | WP_019291354.1 | ClbS/DfsB family four-helix bundle protein | - |
| GIG89_RS01320 | groES | 268799..269080 (+) | 282 | WP_019291353.1 | co-chaperone GroES | - |
| GIG89_RS01325 | groL | 269110..270735 (+) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| GIG89_RS01330 | - | 270785..271597 (-) | 813 | WP_019291352.1 | MBL fold metallo-hydrolase | - |
| GIG89_RS01335 | - | 271594..273012 (-) | 1419 | WP_019291351.1 | ATP-binding protein | - |
| GIG89_RS01340 | yycF | 273005..273706 (-) | 702 | WP_003133894.1 | response regulator YycF | - |
| GIG89_RS01345 | tmk | 273917..274546 (+) | 630 | WP_019291350.1 | dTMP kinase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14707.85 Da Isoelectric Point: 9.3830
>NTDB_id=399179 GIG89_RS01310 WP_019291355.1 267705..268094(+) (ssbB) [Lactococcus petauri strain CF11]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=399179 GIG89_RS01310 WP_019291355.1 267705..268094(+) (ssbB) [Lactococcus petauri strain CF11]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAGCGCTATGTAACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAGCGCTATGTAACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.364 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
52.308 |
100 |
0.527 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
52.308 |
100 |
0.527 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
51.538 |
100 |
0.519 |
| ssbA | Streptococcus mutans UA159 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus mitis SK321 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
51.538 |
100 |
0.519 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
51.538 |
100 |
0.519 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.536 |
86.822 |
0.395 |