Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   APZ19_RS03010 Genome accession   NZ_CP045859
Coordinates   602361..603584 (-) Length   407 a.a.
NCBI ID   WP_009707569.1    Uniprot ID   A0A812FEE4
Organism   Vibrio owensii strain SH14     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 597361..608584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS02970 (APZ19_02970) rpsP 597409..597657 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  APZ19_RS02975 (APZ19_02975) rimM 597688..598236 (+) 549 WP_005438038.1 ribosome maturation factor RimM -
  APZ19_RS02980 (APZ19_02980) trmD 598264..599007 (+) 744 WP_054824003.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  APZ19_RS02985 (APZ19_02985) rplS 599049..599402 (+) 354 WP_005438036.1 50S ribosomal protein L19 -
  APZ19_RS02990 (APZ19_02990) yacG 599779..599973 (-) 195 WP_009707573.1 DNA gyrase inhibitor YacG -
  APZ19_RS02995 (APZ19_02995) zapD 600036..600776 (-) 741 WP_054824030.1 cell division protein ZapD -
  APZ19_RS03000 (APZ19_03000) coaE 600804..601418 (-) 615 WP_009707571.1 dephospho-CoA kinase -
  APZ19_RS03005 (APZ19_03005) pilD 601419..602288 (-) 870 WP_041058619.1 prepilin peptidase Machinery gene
  APZ19_RS03010 (APZ19_03010) pilC 602361..603584 (-) 1224 WP_009707569.1 type II secretion system F family protein Machinery gene
  APZ19_RS03015 (APZ19_03015) pilB 603618..605303 (-) 1686 WP_054824002.1 type IV-A pilus assembly ATPase PilB Machinery gene
  APZ19_RS03020 (APZ19_03020) pilA 605303..605707 (-) 405 WP_054824001.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  APZ19_RS03025 (APZ19_03025) nadC 605972..606859 (-) 888 WP_054824000.1 carboxylating nicotinate-nucleotide diphosphorylase -
  APZ19_RS03030 (APZ19_03030) ampD 606952..607503 (+) 552 WP_005438027.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44910.22 Da        Isoelectric Point: 10.3176

>NTDB_id=398751 APZ19_RS03010 WP_009707569.1 602361..603584(-) (pilC) [Vibrio owensii strain SH14]
MKTITPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKLSHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGS
KVISNRSDSFKLLLARSSLKIPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=398751 APZ19_RS03010 WP_009707569.1 602361..603584(-) (pilC) [Vibrio owensii strain SH14]
ATGAAAACCATCACTCCTCAACTTAAGAACTACCGTTGGAAAGGGATCAATAGCTCAGGTAAGAAGACCTCAGGTAATGT
CCTCGCCATGACGGAAATCGAAGTAAGAGAACGCCTCGACGCTCAGCACATCAAAATCAAGAAACTGAAAAAGGGCAGTA
TTTCTTTTATTACTAAACTGAGCCATAGAGTCAAAGGGAAAGACATCACGGTGTTTACTCGCCAAATAGCTACCATGCTG
ATGACAGGCGTCCCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCATAAAAAAGCGGAAATGAAATCGATTTTAAT
GAGTGTCACAAGGGCTGTTGAAGCCGGAACACCAATGTCGAAAGCCATGCGTACCGCTAGCACGCATTTTGACCCGCTTT
ATACCGATCTAATCGCAACGGGTGAGCAGTCTGGTAACTTATCCCAAGTCTTCGAGCGTTTGGCAACCTACAGGGAAAAA
AGCGAACAGTTGCGCGCGAAAGTAATCAAAGCACTGATTTATCCGGCCATGGTTGTCTTGGTTGCCTTAGGGGTTTCCTA
CCTAATGCTGACCCGGGTCATTCCTGAGTTTGAAAAGATGTTTGTCGGCTTTGGTGCGGATTTACCTGCTTTTACTCAGA
TGGTATTAGACCTCTCTGCTTGGACTCAGAACTGGGGCCCTTTCATTGGGCTCGGTTTCTTGAGTCTCTTGATCGGCTCA
AAAGTCATATCGAACCGCTCTGATTCTTTCAAGCTATTGCTCGCTCGATCCAGTTTAAAGATCCCCATCTTGGGCCCTGT
TTTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACGCTTGCCACCAGTTTTAGTGCCGGTATTCCTATCCTAACCGCCT
TGAAAACTACCTCAAAAACCTCGGGTAACATGCACTATCAATTGGCAATAGAAGAGGTATACCGAGATACGGCTGCGGGT
ATGCCAATGTATATTGCGATGCGCAACTGCAATGTCTTCCCCGAGCTAGTATTGCAAATGGTCATGATTGGCGAAGAATC
TGGCCGCTTGGATGACATGCTCAACAAGATTGCAGCAATTTACGAGTTTGAAGTCGACAATACCGTCGATAACCTAAGTA
AGATTTTAGAGCCGTTGATCATCGTTTTTCTCGGGGTCGTTGTTGGCGGTTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812FEE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

95.577

100

0.956
  pilC Vibrio cholerae strain A1552

73.827

99.509

0.735
  pilC Acinetobacter baylyi ADP1

42.04

98.771

0.415
  pilG Neisseria meningitidis 44/76-A

40.098

100

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilC Acinetobacter baumannii D1279779

40.75

98.28

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria gonorrhoeae MS11

39.851

99.263

0.396

Multiple sequence alignment