Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | APZ19_RS03020 | Genome accession | NZ_CP045859 |
| Coordinates | 605303..605707 (-) | Length | 134 a.a. |
| NCBI ID | WP_054824001.1 | Uniprot ID | A0AAP9K975 |
| Organism | Vibrio owensii strain SH14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 600303..610707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APZ19_RS03000 (APZ19_03000) | coaE | 600804..601418 (-) | 615 | WP_009707571.1 | dephospho-CoA kinase | - |
| APZ19_RS03005 (APZ19_03005) | pilD | 601419..602288 (-) | 870 | WP_041058619.1 | prepilin peptidase | Machinery gene |
| APZ19_RS03010 (APZ19_03010) | pilC | 602361..603584 (-) | 1224 | WP_009707569.1 | type II secretion system F family protein | Machinery gene |
| APZ19_RS03015 (APZ19_03015) | pilB | 603618..605303 (-) | 1686 | WP_054824002.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| APZ19_RS03020 (APZ19_03020) | pilA | 605303..605707 (-) | 405 | WP_054824001.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| APZ19_RS03025 (APZ19_03025) | nadC | 605972..606859 (-) | 888 | WP_054824000.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| APZ19_RS03030 (APZ19_03030) | ampD | 606952..607503 (+) | 552 | WP_005438027.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| APZ19_RS03035 (APZ19_03035) | pdhR | 607908..608675 (+) | 768 | WP_005438026.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13631.59 Da Isoelectric Point: 6.9451
>NTDB_id=398753 APZ19_RS03020 WP_054824001.1 605303..605707(-) (pilA) [Vibrio owensii strain SH14]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGAVSDLGGSAS
HALGNITTTGAGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKGEAATALGSLRALVTPAELKLQQDGELSGAVSDLGGSAS
HALGNITTTGAGVSAAVLTFTFTKGSLSGDAITLTKSTSGWVCNDGTTILDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=398753 APZ19_RS03020 WP_054824001.1 605303..605707(-) (pilA) [Vibrio owensii strain SH14]
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATCGGTGTACT
GTCCGCAATTGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCCTAAGAGCTC
TAGTTACACCTGCAGAGTTAAAACTGCAGCAAGATGGCGAACTATCTGGTGCGGTGTCTGACTTAGGCGGCTCTGCCTCA
CATGCCTTAGGTAATATAACGACAACAGGCGCAGGTGTCAGTGCTGCTGTGCTGACATTTACCTTTACAAAAGGATCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCGATTATCGGTGTACT
GTCCGCAATTGCAGTTCCCGCTTATCAAAATTATGTAGCAAAAGGGGAAGCAGCTACAGCACTTGGTAGCCTAAGAGCTC
TAGTTACACCTGCAGAGTTAAAACTGCAGCAAGATGGCGAACTATCTGGTGCGGTGTCTGACTTAGGCGGCTCTGCCTCA
CATGCCTTAGGTAATATAACGACAACAGGCGCAGGTGTCAGTGCTGCTGTGCTGACATTTACCTTTACAAAAGGATCTCT
ATCTGGTGACGCGATTACTTTAACTAAGTCAACTTCAGGTTGGGTTTGTAACGACGGTACAACTATCTTAGATAACTGTA
ATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.756 |
94.776 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
43.284 |
100 |
0.433 |
| pilA | Vibrio cholerae strain A1552 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae C6706 |
38.406 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.406 |
100 |
0.396 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.686 |
100 |
0.396 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.323 |
92.537 |
0.373 |