Detailed information NTG0398750

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: APZ19_RS03005
• Genome accession: NZ_CP045859
• Coordinates: 601419..602288 (-)
• Length: 289 a.a.
• NCBI ID: WP_041058619.1
• Uniprot ID: A0AAP9GA24
• Organism: Vibrio owensii strain SH14
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 596419..607288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APZ19_RS02970 (APZ19_02970)	rpsP	597409..597657 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
APZ19_RS02975 (APZ19_02975)	rimM	597688..598236 (+)	549	WP_005438038.1	ribosome maturation factor RimM	-
APZ19_RS02980 (APZ19_02980)	trmD	598264..599007 (+)	744	WP_054824003.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
APZ19_RS02985 (APZ19_02985)	rplS	599049..599402 (+)	354	WP_005438036.1	50S ribosomal protein L19	-
APZ19_RS02990 (APZ19_02990)	yacG	599779..599973 (-)	195	WP_009707573.1	DNA gyrase inhibitor YacG	-
APZ19_RS02995 (APZ19_02995)	zapD	600036..600776 (-)	741	WP_054824030.1	cell division protein ZapD	-
APZ19_RS03000 (APZ19_03000)	coaE	600804..601418 (-)	615	WP_009707571.1	dephospho-CoA kinase	-
APZ19_RS03005 (APZ19_03005)	pilD	601419..602288 (-)	870	WP_041058619.1	prepilin peptidase	Machinery gene
APZ19_RS03010 (APZ19_03010)	pilC	602361..603584 (-)	1224	WP_009707569.1	type II secretion system F family protein	Machinery gene
APZ19_RS03015 (APZ19_03015)	pilB	603618..605303 (-)	1686	WP_054824002.1	type IV-A pilus assembly ATPase PilB	Machinery gene
APZ19_RS03020 (APZ19_03020)	pilA	605303..605707 (-)	405	WP_054824001.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
APZ19_RS03025 (APZ19_03025)	nadC	605972..606859 (-)	888	WP_054824000.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32648.87 Da
• Isoelectric Point: 7.8754

>NTDB_id=398750 APZ19_RS03005 WP_041058619.1 601419..602288(-) (pilD) [Vibrio owensii strain SH14]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVNLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=398750 APZ19_RS03005 WP_041058619.1 601419..602288(-) (pilD) [Vibrio owensii strain SH14]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTTGTTATTTATCGATTACCCAAAATCATGGAATTAGAATGGCGACGCGAATGCGCGGAATCGTTCCCTGAATATAAAA
TAGAACCACCAAAAGAGAAGCTGACATTAAGCGTACCACGCTCATCTTGTCAGCAATGTGGTACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTGCTTCTACGCGGTAAATGCCACAACTGCCAATCTCCTATCAGTGCACGCTATCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACGTTTATCGATCTCGATACCATGTTGTTGCCAGACCAGCTTACATTGCCA
TTAATGTGGGCAGGTATTGCGCTCGCGCTTTCTGGTATCAGTCCTGTGAACCTACAAGACTCCATCATTGGTGCTATGGC
AGGTTATCTGTGTCTTTGGAGTGTTTACTGGTTGTTTAAGCTCCTTACAGGCAAAGAAGGCATGGGTTATGGTGACTTTA
AACTCCTTGCCGCATTAGGTGCTTGGTTGGGTTGGCAATCGCTACCGATGATCATTCTGCTTTCATCAGTAGTGGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCAATTGC
GGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.924	100	0.979
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter baumannii D1279779	52.364	95.156	0.498
pilD	Acinetobacter nosocomialis M2	52.364	95.156	0.498
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436