Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GII14_RS02050 Genome accession   NZ_CP045857
Coordinates   418176..419444 (-) Length   422 a.a.
NCBI ID   WP_101055955.1    Uniprot ID   A0A6G7LMW0
Organism   Shewanella chilikensis strain DC57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413176..424444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII14_RS02025 (GII14_02020) mutT 415183..415581 (-) 399 WP_101055951.1 8-oxo-dGTP diphosphatase MutT -
  GII14_RS02030 (GII14_02025) yacG 415578..415793 (-) 216 WP_039033599.1 DNA gyrase inhibitor YacG -
  GII14_RS02035 (GII14_02030) zapD 415838..416578 (-) 741 WP_165564352.1 cell division protein ZapD -
  GII14_RS02040 (GII14_02035) coaE 416575..417186 (-) 612 WP_165564353.1 dephospho-CoA kinase -
  GII14_RS02045 (GII14_02040) pilD 417187..418101 (-) 915 WP_165564354.1 A24 family peptidase Machinery gene
  GII14_RS02050 (GII14_02045) pilC 418176..419444 (-) 1269 WP_101055955.1 type II secretion system F family protein Machinery gene
  GII14_RS02055 (GII14_02050) pilB 419620..421326 (-) 1707 WP_165564355.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GII14_RS02060 (GII14_02055) - 421519..421890 (+) 372 Protein_380 helix-turn-helix domain-containing protein -
  GII14_RS22470 (GII14_02060) - 421829..422287 (-) 459 WP_165564356.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GII14_RS02070 (GII14_02065) - 422356..422736 (+) 381 WP_165564357.1 hypothetical protein -
  GII14_RS02075 (GII14_02070) nadC 423277..424137 (-) 861 WP_101055958.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45933.26 Da        Isoelectric Point: 10.2875

>NTDB_id=398681 GII14_RS02050 WP_101055955.1 418176..419444(-) (pilC) [Shewanella chilikensis strain DC57]
MATATATAKNNKAKTKGAKAQAKIYTFTWKGLNRDGKQSSGELRGASIAEIKSLLKNQGINPKLVRKKSASLFGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRILLGTVLADVQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFASFGAELPAFTQLIVNISRWLQST
WYLFLAAIVIGVWLFVRAHRNSEKFRNRIDEMVLKIPLIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=398681 GII14_RS02050 WP_101055955.1 418176..419444(-) (pilC) [Shewanella chilikensis strain DC57]
ATGGCCACAGCAACGGCAACAGCTAAAAACAATAAAGCCAAAACCAAAGGTGCCAAGGCTCAAGCCAAGATCTACACCTT
CACCTGGAAAGGTCTTAACCGCGATGGCAAGCAAAGCTCCGGCGAATTGCGCGGCGCCAGCATTGCCGAAATCAAAAGCT
TGCTGAAAAACCAGGGGATTAATCCCAAACTGGTACGTAAAAAGTCTGCCTCTCTCTTTGGTGGTGATAAAAAAATCAAG
CCGATGGATATCGCGGTGATCACCCGCCAGATAGCCACCATGCTGGCCGCAGGTGTGCCCTTGGTGACCTCCATCGAGTT
GATTGCCCGCGGCCATGAGAAAAACAAGGTGCGTATTTTGCTGGGCACTGTGCTGGCCGATGTTCAGGCCGGTATTCCCC
TTTCCGATGCCCTGCGCCCCCACAGGGCTTATTTCGACGATCTCTATGTCGACCTGGTGGCCGCCGGGGAACATTCCGGC
TCTTTGGATGCGGTATTTGACCGTATCGCGACCTACAGAGAAAAAGCCGAGGCGCTCAAGTCCAAGATCAAAAAAGCCAT
GTTCTATCCCGCGGCGGTAGTTGTGGTTGCCATAGCAGTTACTGTGCTGCTATTGCTGTTTGTAGTACCTCAGTTCGAAA
GTATCTTTGCCAGCTTTGGCGCCGAACTGCCCGCCTTTACCCAGTTGATAGTTAATATAAGCCGTTGGCTGCAAAGTACC
TGGTATCTGTTTCTCGCGGCAATTGTTATCGGGGTTTGGCTGTTTGTCCGCGCCCATCGCAACTCGGAAAAGTTTCGTAA
CCGTATCGATGAAATGGTGCTTAAAATTCCCCTGATTGGCGAAATTCTCCATAAGGCTGCCATGGCCCGTTTCGCCCGCA
CCCTGGCCACTACCTTTGCCGCCGGGGTACCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAACTATGTC
TACCGCAAGGCCCTGCTGAATGTACGTACCGAAGTGATGGCCGGTATGCAAATGAACGTAGCCATGCGTACCACCAAGCT
GTTTCCCGATATGCTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCGCTGGATAATATGCTCAACAAGATAGCCA
ATATTTATGAGATGCAGGTAGATGACGCCGTAGACGGGCTTTCCAGCCTGATTGAACCCATTATGATGGTGGTGATAGGT
ACTCTGGTAGGCGGCCTTATTGTAGGTATGTACCTGCCTATCTTCCAAATGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7LMW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

95.735

0.538
  pilC Acinetobacter baylyi ADP1

50.493

96.209

0.486
  pilC Acinetobacter baumannii D1279779

49.749

94.313

0.469
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Vibrio cholerae strain A1552

46.985

94.313

0.443
  pilC Vibrio campbellii strain DS40M4

44.527

95.261

0.424
  pilG Neisseria meningitidis 44/76-A

43.081

90.758

0.391
  pilG Neisseria gonorrhoeae MS11

43.081

90.758

0.391

Multiple sequence alignment