Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HRD51_RS15510 Genome accession   NZ_CP054019
Coordinates   3467298..3467900 (-) Length   200 a.a.
NCBI ID   WP_205369925.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462298..3472900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS15495 (HRD51_15255) - 3464011..3464976 (+) 966 WP_205364971.1 hypothetical protein -
  HRD51_RS15500 (HRD51_15260) clpX 3465113..3466396 (-) 1284 WP_016574019.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HRD51_RS15505 (HRD51_15265) clpP 3466558..3467232 (-) 675 WP_073442521.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HRD51_RS15510 (HRD51_15270) clpP 3467298..3467900 (-) 603 WP_205369925.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HRD51_RS15515 (HRD51_15275) tig 3468200..3469597 (-) 1398 WP_235093334.1 trigger factor -
  HRD51_RS15530 (HRD51_15290) - 3470700..3471080 (+) 381 WP_235093335.1 arsenate reductase family protein -
  HRD51_RS15535 (HRD51_15295) - 3471121..3471315 (-) 195 WP_039636401.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21059.95 Da        Isoelectric Point: 4.6579

>NTDB_id=397202 HRD51_RS15510 WP_205369925.1 3467298..3467900(-) (clpP) [Streptomyces sp. A1-5]
MPSAAAEPTSGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPEKDIFLYINSPGGSVTAGMAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAEQLLRTKKRLGELSAMHTGQTLEQ
WTKDADRDRWFTADEAKAYGLIDDVMPSATGVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=397202 HRD51_RS15510 WP_205369925.1 3467298..3467900(-) (clpP) [Streptomyces sp. A1-5]
ATGCCTTCCGCCGCCGCTGAGCCGACCTCCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTCGCCGCTGACCCGGAAA
AGGACATCTTCCTCTACATCAACTCCCCGGGCGGCTCGGTCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTCACCATCGCCATGGGCCTCGCCGCTTCGATGGGCCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCCGGCCTGGCGGGTTCGGCCTCGGACATCAAGA
TCCACGCCGAGCAGCTGCTGCGTACGAAGAAGCGCCTGGGCGAGCTCTCCGCCATGCACACCGGCCAGACGCTGGAGCAG
TGGACCAAGGACGCCGACCGCGACCGTTGGTTCACCGCCGATGAGGCCAAGGCGTACGGCCTCATCGACGACGTCATGCC
CTCCGCCACCGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

52.88

95.5

0.505
  clpP Bacillus subtilis subsp. subtilis str. 168

54.011

93.5

0.505
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.356

95.5

0.5
  clpP Streptococcus mutans UA159

52.356

95.5

0.5
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Streptococcus pyogenes MGAS315

50.785

95.5

0.485
  clpP Streptococcus pyogenes JRS4

50.785

95.5

0.485
  clpP Streptococcus thermophilus LMG 18311

49.215

95.5

0.47
  clpP Streptococcus thermophilus LMD-9

49.215

95.5

0.47
  clpP Streptococcus pneumoniae Rx1

48.691

95.5

0.465
  clpP Streptococcus pneumoniae D39

48.691

95.5

0.465
  clpP Streptococcus pneumoniae R6

48.691

95.5

0.465
  clpP Streptococcus pneumoniae TIGR4

48.691

95.5

0.465

Multiple sequence alignment