Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HRD51_RS15505 Genome accession   NZ_CP054019
Coordinates   3466558..3467232 (-) Length   224 a.a.
NCBI ID   WP_073442521.1    Uniprot ID   A0A2N8PQP0
Organism   Streptomyces sp. A1-5     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3461558..3472232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS15495 (HRD51_15255) - 3464011..3464976 (+) 966 WP_205364971.1 hypothetical protein -
  HRD51_RS15500 (HRD51_15260) clpX 3465113..3466396 (-) 1284 WP_016574019.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HRD51_RS15505 (HRD51_15265) clpP 3466558..3467232 (-) 675 WP_073442521.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HRD51_RS15510 (HRD51_15270) clpP 3467298..3467900 (-) 603 WP_205369925.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HRD51_RS15515 (HRD51_15275) tig 3468200..3469597 (-) 1398 WP_235093334.1 trigger factor -
  HRD51_RS15530 (HRD51_15290) - 3470700..3471080 (+) 381 WP_235093335.1 arsenate reductase family protein -
  HRD51_RS15535 (HRD51_15295) - 3471121..3471315 (-) 195 WP_039636401.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24772.20 Da        Isoelectric Point: 4.7428

>NTDB_id=397201 HRD51_RS15505 WP_073442521.1 3466558..3467232(-) (clpP) [Streptomyces sp. A1-5]
MNNFPGSGLYERTKAEFSGMPAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQVDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPFSETGRGQVSD
LEIAAREIQRMRTQLEEMLAKHSSTPIEKIREDIERDKILTAEESLAYGLVDQIVSTRKTSVSV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=397201 HRD51_RS15505 WP_073442521.1 3466558..3467232(-) (clpP) [Streptomyces sp. A1-5]
ATGAACAACTTCCCCGGAAGCGGCCTCTACGAGCGCACCAAGGCCGAGTTCTCCGGCATGCCCGCCGAGTCCCGCTATAT
CGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCCTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGGTCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACGGCGCTGACGGCGATCTACGACACCATGCAGTT
CGTCAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCGGCCGGCACCCCGG
GCAAGCGCATGGCGCTGCCCAACGCCAGGGTCCTGATCCACCAGCCCTTCAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCCGCGAGATCCAGCGGATGCGCACGCAGCTGGAGGAGATGCTGGCCAAGCACTCGTCCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGGGACAAGATCCTGACCGCCGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACGCGGAAGACCTCCGTCTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8PQP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.821

0.424
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

83.929

0.402
  clpP Streptococcus mutans UA159

44.949

88.393

0.397
  clpP Streptococcus pyogenes MGAS315

45.361

86.607

0.393
  clpP Streptococcus pyogenes JRS4

45.361

86.607

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

85.268

0.388
  clpP Streptococcus pneumoniae Rx1

44.56

86.161

0.384
  clpP Streptococcus pneumoniae D39

44.56

86.161

0.384
  clpP Streptococcus pneumoniae R6

44.56

86.161

0.384
  clpP Streptococcus pneumoniae TIGR4

44.56

86.161

0.384
  clpP Streptococcus thermophilus LMG 18311

44.33

86.607

0.384
  clpP Streptococcus thermophilus LMD-9

44.33

86.607

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

85.268

0.379

Multiple sequence alignment