Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VVMO6_RS02905 Genome accession   NC_014965
Coordinates   583546..584772 (-) Length   408 a.a.
NCBI ID   WP_013571139.1    Uniprot ID   -
Organism   Vibrio vulnificus MO6-24/O     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578546..589772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS02865 (VVM_01010) rpsP 578725..578973 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  VVMO6_RS02870 (VVM_01011) rimM 578989..579537 (+) 549 WP_011079542.1 ribosome maturation factor RimM -
  VVMO6_RS02875 (VVM_01012) trmD 579565..580314 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VVMO6_RS02880 (VVM_01015) rplS 580356..580709 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  VVMO6_RS02885 (VVM_01017) yacG 580943..581137 (-) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  VVMO6_RS02890 (VVM_01020) zapD 581200..581940 (-) 741 WP_011079546.1 cell division protein ZapD -
  VVMO6_RS02895 (VVM_01021) coaE 581973..582581 (-) 609 WP_011151132.1 dephospho-CoA kinase -
  VVMO6_RS02900 (VVM_01024) pilD 582583..583452 (-) 870 WP_013571138.1 A24 family peptidase Machinery gene
  VVMO6_RS02905 (VVM_01026) pilC 583546..584772 (-) 1227 WP_013571139.1 type II secretion system F family protein Machinery gene
  VVMO6_RS02910 (VVM_01027) pilB 584820..586508 (-) 1689 WP_013571140.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VVMO6_RS02915 (VVM_01028) - 586508..586951 (-) 444 WP_013571141.1 pilin -
  VVMO6_RS02920 (VVM_01030) nadC 587174..588061 (-) 888 WP_013571142.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VVMO6_RS02925 (VVM_01031) ampD 588154..588726 (+) 573 WP_013571143.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45239.51 Da        Isoelectric Point: 10.3244

>NTDB_id=39673 VVMO6_RS02905 WP_013571139.1 583546..584772(-) (pilC) [Vibrio vulnificus MO6-24/O]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLSTM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=39673 VVMO6_RS02905 WP_013571139.1 583546..584772(-) (pilC) [Vibrio vulnificus MO6-24/O]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCTCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAAGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAAATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCCTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCGCCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilC Pseudomonas stutzeri DSM 10701

41.089

99.02

0.407
  pilG Neisseria meningitidis 44/76-A

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

39.512

100

0.397
  pilC Acinetobacter baylyi ADP1

40.351

97.794

0.395
  pilC Legionella pneumophila strain ERS1305867

39.851

99.02

0.395

Multiple sequence alignment