Detailed information NTG0039672

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VVMO6_RS02900
• Genome accession: NC_014965
• Coordinates: 582583..583452 (-)
• Length: 289 a.a.
• NCBI ID: WP_013571138.1
• Uniprot ID: B7U4R6
• Organism: Vibrio vulnificus MO6-24/O
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 577583..588452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VVMO6_RS02865 (VVM_01010)	rpsP	578725..578973 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
VVMO6_RS02870 (VVM_01011)	rimM	578989..579537 (+)	549	WP_011079542.1	ribosome maturation factor RimM	-
VVMO6_RS02875 (VVM_01012)	trmD	579565..580314 (+)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VVMO6_RS02880 (VVM_01015)	rplS	580356..580709 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
VVMO6_RS02885 (VVM_01017)	yacG	580943..581137 (-)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
VVMO6_RS02890 (VVM_01020)	zapD	581200..581940 (-)	741	WP_011079546.1	cell division protein ZapD	-
VVMO6_RS02895 (VVM_01021)	coaE	581973..582581 (-)	609	WP_011151132.1	dephospho-CoA kinase	-
VVMO6_RS02900 (VVM_01024)	pilD	582583..583452 (-)	870	WP_013571138.1	A24 family peptidase	Machinery gene
VVMO6_RS02905 (VVM_01026)	pilC	583546..584772 (-)	1227	WP_013571139.1	type II secretion system F family protein	Machinery gene
VVMO6_RS02910 (VVM_01027)	pilB	584820..586508 (-)	1689	WP_013571140.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VVMO6_RS02915 (VVM_01028)	-	586508..586951 (-)	444	WP_013571141.1	pilin	-
VVMO6_RS02920 (VVM_01030)	nadC	587174..588061 (-)	888	WP_013571142.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32249.29 Da
• Isoelectric Point: 6.4630

>NTDB_id=39672 VVMO6_RS02900 WP_013571138.1 582583..583452(-) (pilD) [Vibrio vulnificus MO6-24/O]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLMGA

Nucleotide

• Length: 870 bp

>NTDB_id=39672 VVMO6_RS02900 WP_013571138.1 582583..583452(-) (pilD) [Vibrio vulnificus MO6-24/O]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGTCCTTCGTGCCACACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGTTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGGTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTCGTGGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATACCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCCGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATGGGGGCATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: B7U4R6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.163	100	0.772
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457