Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GFB47_RS01495 Genome accession   NZ_CP045699
Coordinates   334545..335777 (-) Length   410 a.a.
NCBI ID   WP_153446005.1    Uniprot ID   A0A5Q0TAQ5
Organism   Vibrio algicola strain SM1977     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329545..340777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS01465 (GFB47_01470) - 329901..330038 (-) 138 WP_153445995.1 hypothetical protein -
  GFB47_RS01470 (GFB47_01475) - 330426..331406 (+) 981 WP_153445997.1 MDR family oxidoreductase -
  GFB47_RS01475 (GFB47_01480) yacG 331879..332082 (-) 204 WP_153445999.1 DNA gyrase inhibitor YacG -
  GFB47_RS01480 (GFB47_01485) zapD 332136..332867 (-) 732 WP_407701681.1 cell division protein ZapD -
  GFB47_RS01485 (GFB47_01490) coaE 332979..333590 (-) 612 WP_153446001.1 dephospho-CoA kinase -
  GFB47_RS01490 (GFB47_01495) pilD 333595..334506 (-) 912 WP_153446003.1 A24 family peptidase Machinery gene
  GFB47_RS01495 (GFB47_01500) pilC 334545..335777 (-) 1233 WP_153446005.1 type II secretion system F family protein Machinery gene
  GFB47_RS01500 (GFB47_01505) pilB 335828..337516 (-) 1689 WP_153446007.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GFB47_RS01505 (GFB47_01510) - 337530..337991 (-) 462 WP_153446009.1 pilin -
  GFB47_RS01510 (GFB47_01515) - 338740..339549 (-) 810 WP_153446011.1 DUF547 domain-containing protein -
  GFB47_RS01515 (GFB47_01520) pdhR 339964..340731 (+) 768 WP_153446013.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45489.02 Da        Isoelectric Point: 10.4889

>NTDB_id=396066 GFB47_RS01495 WP_153446005.1 334545..335777(-) (pilC) [Vibrio algicola strain SM1977]
MPKTAKIKAPTLRNFQWRGVNSSGKKVSGQIMAINESEVRAKLKEQRVQIKKLKRRSVSFIAKMSHKVKRKDITVLTRQL
STMLTTGVPIVQSLKLIADSQRKAEMKSILSIICTQVEAGTPISKALKASSPFFDDFYCDLVATGEQTGNLGQVFERLAT
YREKSEELRSKVIKAMIYPGMVMLVATSVSILMLTMVIPEFETMFKGFGAELPAFTQRVIDLSHFIQDYLLLMIIGVFVF
IFAVKQARKRSFSFRLKTSRIALKMPVLGPVFSKAAIAKFSRTLSTSFSAGIPILTSLLTTAKTAGSLHYQVAVEQVHKD
TAAGMPMYIAMRNAEAFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKIIEPAIIVFLGVVVGGLVVSLY
LPIFKLVSVF

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=396066 GFB47_RS01495 WP_153446005.1 334545..335777(-) (pilC) [Vibrio algicola strain SM1977]
ATGCCTAAAACTGCCAAAATTAAAGCGCCAACTTTACGCAACTTTCAATGGCGTGGAGTCAATAGCTCGGGCAAAAAAGT
CTCTGGGCAGATCATGGCAATCAATGAGAGCGAAGTGCGCGCCAAATTAAAAGAGCAACGGGTACAAATCAAAAAACTCA
AACGTCGCAGTGTGTCTTTTATTGCCAAAATGAGCCATAAAGTAAAACGCAAAGACATCACGGTATTAACTCGCCAACTT
TCCACCATGCTGACCACTGGCGTGCCGATTGTACAATCACTCAAACTGATCGCCGACAGCCAACGTAAAGCGGAAATGAA
GTCGATATTGTCGATCATTTGTACTCAAGTTGAAGCCGGTACTCCTATCTCTAAAGCGCTTAAAGCCAGTAGCCCCTTTT
TTGATGATTTCTATTGTGACTTAGTCGCCACCGGTGAACAAACTGGTAATTTAGGCCAAGTTTTTGAACGCCTTGCCACC
TACCGAGAAAAAAGTGAAGAACTGCGATCCAAAGTGATCAAAGCGATGATCTACCCAGGCATGGTAATGTTGGTTGCTAC
CAGTGTCTCAATTTTAATGTTAACTATGGTTATTCCTGAGTTTGAAACCATGTTTAAAGGCTTCGGCGCTGAACTGCCCG
CTTTTACCCAACGAGTGATCGACCTGTCTCACTTTATTCAAGACTACTTATTGCTAATGATCATCGGGGTATTTGTGTTT
ATCTTTGCGGTGAAACAAGCTCGCAAACGCTCATTTAGTTTTAGATTAAAGACCAGTCGTATAGCGTTAAAAATGCCAGT
ATTAGGACCGGTATTTTCCAAAGCGGCGATCGCCAAATTCAGCCGAACTCTTTCTACTAGCTTTAGCGCCGGTATTCCAA
TTTTAACCAGCCTACTCACCACCGCTAAAACCGCTGGTAGCTTGCATTATCAAGTGGCGGTTGAGCAAGTCCACAAAGAC
ACTGCCGCCGGCATGCCGATGTACATAGCAATGCGTAATGCCGAGGCGTTTCCTGAAATGGTATTGCAGATGGTGATGAT
TGGCGAAGAGTCCGGTAACTTGGATGATATGCTCAATAAGGTCGCCACCATTTATGAGTTTGAAGTGGATAACACCGTCG
ATAATTTAGGTAAAATCATTGAACCTGCGATCATTGTCTTTTTAGGCGTAGTGGTTGGCGGACTGGTGGTGTCACTTTAT
CTGCCAATCTTTAAGCTAGTTAGTGTATTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-199)

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0TAQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.927

97.317

0.69
  pilC Vibrio campbellii strain DS40M4

65.926

98.78

0.651
  pilC Acinetobacter baumannii D1279779

42.432

98.293

0.417
  pilC Pseudomonas stutzeri DSM 10701

41.519

96.341

0.4
  pilC Acinetobacter baylyi ADP1

41.162

96.585

0.398
  pilC Legionella pneumophila strain ERS1305867

40.399

97.805

0.395
  pilG Neisseria meningitidis 44/76-A

39.9

97.805

0.39
  pilG Neisseria gonorrhoeae MS11

39.9

97.805

0.39

Multiple sequence alignment