Detailed information NTG0395461

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: GFB63_RS03395
• Genome accession: NZ_CP045596
• Coordinates: 668834..669262 (-)
• Length: 142 a.a.
• NCBI ID: WP_171815055.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain TK-P3A
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 663834..674262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFB63_RS03355 (GFB63_03445)	-	663971..664414 (-)	444	WP_041829335.1	hypothetical protein	-
GFB63_RS10520 (GFB63_03450)	-	664488..664826 (-)	339	WP_228024408.1	CPBP family intramembrane glutamic endopeptidase	-
GFB63_RS10525 (GFB63_03455)	-	664870..665145 (-)	276	WP_084826166.1	CAAX protease	-
GFB63_RS03365 (GFB63_03460)	-	665157..665354 (-)	198	WP_084826167.1	helix-turn-helix transcriptional regulator	-
GFB63_RS03370 (GFB63_03465)	-	665603..666796 (-)	1194	WP_084826168.1	acetate kinase	-
GFB63_RS03375 (GFB63_03470)	comYH	666852..667808 (-)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
GFB63_RS03380 (GFB63_03475)	comGG	667853..668170 (-)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
GFB63_RS03385 (GFB63_03480)	comYF	668148..668585 (-)	438	WP_084829135.1	competence type IV pilus minor pilin ComGF	Machinery gene
GFB63_RS03390 (GFB63_03485)	comGE	668569..668862 (-)	294	WP_084829136.1	competence type IV pilus minor pilin ComGE	-
GFB63_RS03395 (GFB63_03490)	comYD	668834..669262 (-)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
GFB63_RS03400 (GFB63_03495)	comYC	669222..669548 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
GFB63_RS03405 (GFB63_03500)	comYB	669545..670645 (-)	1101	WP_144239090.1	competence type IV pilus assembly protein ComGB	Machinery gene
GFB63_RS03410 (GFB63_03505)	comYA	670527..671468 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
GFB63_RS03415 (GFB63_03510)	-	671549..671911 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15874.46 Da
• Isoelectric Point: 10.4608

>NTDB_id=395461 GFB63_RS03395 WP_171815055.1 668834..669262(-) (comYD) [Streptococcus thermophilus strain TK-P3A]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASSEGSNVELQLTKN
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=395461 GFB63_RS03395 WP_171815055.1 668834..669262(-) (comYD) [Streptococcus thermophilus strain TK-P3A]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACGCTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCATCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGAAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae D39	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae R6	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis NCTC 12261	43.307	89.437	0.387
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	89.437	0.387
comGD/cglD	Streptococcus mitis SK321	42.52	89.437	0.38
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38