Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GAY96_RS10500 | Genome accession | NZ_CP045550 |
| Coordinates | 2223473..2224699 (+) | Length | 408 a.a. |
| NCBI ID | WP_265573464.1 | Uniprot ID | - |
| Organism | Venatoribacter cucullus strain ASxS5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2218473..2229699
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GAY96_RS10485 (GAY96_10420) | - | 2219136..2219585 (+) | 450 | WP_277613408.1 | pilin | - |
| GAY96_RS10490 (GAY96_10425) | - | 2219647..2221650 (+) | 2004 | WP_265573463.1 | sulfatase-like hydrolase/transferase | - |
| GAY96_RS10495 (GAY96_10430) | pilB | 2221727..2223427 (+) | 1701 | WP_228344961.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GAY96_RS10500 (GAY96_10435) | pilC | 2223473..2224699 (+) | 1227 | WP_265573464.1 | type II secretion system F family protein | Machinery gene |
| GAY96_RS10505 (GAY96_10440) | pilD | 2224699..2225577 (+) | 879 | WP_265573465.1 | prepilin peptidase | Machinery gene |
| GAY96_RS10510 (GAY96_10445) | coaE | 2225577..2226173 (+) | 597 | WP_420910981.1 | dephospho-CoA kinase | - |
| GAY96_RS10515 (GAY96_10450) | yacG | 2226304..2226504 (+) | 201 | WP_265573466.1 | DNA gyrase inhibitor YacG | - |
| GAY96_RS10520 (GAY96_10455) | - | 2226640..2227098 (-) | 459 | WP_265573467.1 | copper chaperone PCu(A)C | - |
| GAY96_RS10525 (GAY96_10460) | - | 2227240..2229201 (-) | 1962 | WP_265573468.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44449.96 Da Isoelectric Point: 8.6266
>NTDB_id=394976 GAY96_RS10500 WP_265573464.1 2223473..2224699(+) (pilC) [Venatoribacter cucullus strain ASxS5]
MAKQIKNSSFTWEGTNRRGQTIKGEMSGQNAAIVKAQLRKQGVTPLKVRKAAQPLFGIGGPKKKKIQSSDITFFTRQMAT
MIKAGVPLVQSFDIVADGMDNVSMKELVYTIRDSVSAGNDFASALKQHPEYFDDLTCNLVESGEQAGALESMLDKVAVYK
EKTESLKKKIKKALMYPAITLAIAFIVTIILLVKVVPTFQEMFNNFGAELPAPTQFVVYLSVVAQEYWLHVFGVLAIIGV
GFSQGLKRSPAFRDAFEKFTLQVPVFGDLIRKAAVARYARVLSTTFAAGVPLVEALESVSGAVGNVVYREAVLKIRDEVS
SGQQMHFAMKSTGVFPNMVVQMTSIGEESGALDAMLDKAATYFEEDVDATVDGMTAMLEPMVMAFLGVVIGGLIIAMYLP
IFQMGDVV
MAKQIKNSSFTWEGTNRRGQTIKGEMSGQNAAIVKAQLRKQGVTPLKVRKAAQPLFGIGGPKKKKIQSSDITFFTRQMAT
MIKAGVPLVQSFDIVADGMDNVSMKELVYTIRDSVSAGNDFASALKQHPEYFDDLTCNLVESGEQAGALESMLDKVAVYK
EKTESLKKKIKKALMYPAITLAIAFIVTIILLVKVVPTFQEMFNNFGAELPAPTQFVVYLSVVAQEYWLHVFGVLAIIGV
GFSQGLKRSPAFRDAFEKFTLQVPVFGDLIRKAAVARYARVLSTTFAAGVPLVEALESVSGAVGNVVYREAVLKIRDEVS
SGQQMHFAMKSTGVFPNMVVQMTSIGEESGALDAMLDKAATYFEEDVDATVDGMTAMLEPMVMAFLGVVIGGLIIAMYLP
IFQMGDVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=394976 GAY96_RS10500 WP_265573464.1 2223473..2224699(+) (pilC) [Venatoribacter cucullus strain ASxS5]
ATGGCCAAACAAATTAAAAACAGCAGCTTCACCTGGGAAGGCACCAACCGCCGCGGGCAGACCATTAAGGGCGAAATGTC
GGGCCAGAACGCCGCTATCGTGAAAGCCCAGCTGCGCAAACAGGGTGTAACCCCGCTGAAAGTGCGTAAAGCCGCGCAGC
CGCTGTTTGGCATTGGTGGGCCGAAGAAAAAGAAAATTCAGTCATCAGACATCACCTTTTTTACCCGCCAGATGGCCACC
ATGATCAAGGCCGGTGTGCCGCTGGTGCAGTCGTTCGACATCGTTGCCGATGGCATGGACAACGTCTCGATGAAAGAACT
GGTGTACACCATCCGCGACAGCGTCTCGGCGGGTAACGATTTTGCTTCGGCGCTGAAACAGCACCCGGAATACTTTGATG
ATTTAACCTGCAACCTGGTGGAATCCGGCGAACAGGCCGGTGCGCTGGAGTCCATGCTGGACAAAGTGGCGGTGTATAAA
GAAAAAACCGAATCGCTGAAAAAGAAGATCAAAAAGGCGCTGATGTACCCGGCCATTACCCTGGCCATCGCCTTTATTGT
GACCATTATCCTGCTGGTGAAAGTGGTGCCGACCTTCCAGGAAATGTTCAATAACTTCGGTGCTGAACTGCCGGCGCCCA
CTCAGTTTGTGGTGTATTTATCGGTAGTGGCACAGGAATACTGGCTGCATGTATTTGGTGTTCTGGCCATTATTGGCGTT
GGCTTTAGCCAGGGTCTGAAACGCTCGCCGGCATTCCGCGATGCTTTTGAAAAATTCACCCTGCAGGTACCGGTGTTCGG
TGACTTAATCCGCAAAGCGGCAGTAGCCCGTTATGCCCGCGTACTCTCCACCACCTTTGCCGCCGGTGTGCCGTTGGTGG
AAGCGCTGGAGTCGGTATCCGGTGCTGTGGGCAACGTGGTGTACCGTGAAGCGGTGCTGAAAATCCGTGATGAAGTTTCG
TCCGGCCAGCAGATGCACTTTGCCATGAAATCCACCGGTGTGTTCCCCAACATGGTGGTGCAGATGACCAGTATTGGTGA
AGAGTCCGGTGCTCTGGATGCCATGCTGGATAAAGCCGCCACCTACTTTGAAGAAGACGTTGATGCCACGGTAGACGGCA
TGACCGCCATGCTGGAGCCGATGGTAATGGCGTTCCTCGGCGTGGTAATTGGTGGCCTGATCATCGCCATGTACCTGCCC
ATCTTCCAGATGGGGGACGTGGTGTAA
ATGGCCAAACAAATTAAAAACAGCAGCTTCACCTGGGAAGGCACCAACCGCCGCGGGCAGACCATTAAGGGCGAAATGTC
GGGCCAGAACGCCGCTATCGTGAAAGCCCAGCTGCGCAAACAGGGTGTAACCCCGCTGAAAGTGCGTAAAGCCGCGCAGC
CGCTGTTTGGCATTGGTGGGCCGAAGAAAAAGAAAATTCAGTCATCAGACATCACCTTTTTTACCCGCCAGATGGCCACC
ATGATCAAGGCCGGTGTGCCGCTGGTGCAGTCGTTCGACATCGTTGCCGATGGCATGGACAACGTCTCGATGAAAGAACT
GGTGTACACCATCCGCGACAGCGTCTCGGCGGGTAACGATTTTGCTTCGGCGCTGAAACAGCACCCGGAATACTTTGATG
ATTTAACCTGCAACCTGGTGGAATCCGGCGAACAGGCCGGTGCGCTGGAGTCCATGCTGGACAAAGTGGCGGTGTATAAA
GAAAAAACCGAATCGCTGAAAAAGAAGATCAAAAAGGCGCTGATGTACCCGGCCATTACCCTGGCCATCGCCTTTATTGT
GACCATTATCCTGCTGGTGAAAGTGGTGCCGACCTTCCAGGAAATGTTCAATAACTTCGGTGCTGAACTGCCGGCGCCCA
CTCAGTTTGTGGTGTATTTATCGGTAGTGGCACAGGAATACTGGCTGCATGTATTTGGTGTTCTGGCCATTATTGGCGTT
GGCTTTAGCCAGGGTCTGAAACGCTCGCCGGCATTCCGCGATGCTTTTGAAAAATTCACCCTGCAGGTACCGGTGTTCGG
TGACTTAATCCGCAAAGCGGCAGTAGCCCGTTATGCCCGCGTACTCTCCACCACCTTTGCCGCCGGTGTGCCGTTGGTGG
AAGCGCTGGAGTCGGTATCCGGTGCTGTGGGCAACGTGGTGTACCGTGAAGCGGTGCTGAAAATCCGTGATGAAGTTTCG
TCCGGCCAGCAGATGCACTTTGCCATGAAATCCACCGGTGTGTTCCCCAACATGGTGGTGCAGATGACCAGTATTGGTGA
AGAGTCCGGTGCTCTGGATGCCATGCTGGATAAAGCCGCCACCTACTTTGAAGAAGACGTTGATGCCACGGTAGACGGCA
TGACCGCCATGCTGGAGCCGATGGTAATGGCGTTCCTCGGCGTGGTAATTGGTGGCCTGATCATCGCCATGTACCTGCCC
ATCTTCCAGATGGGGGACGTGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
60.837 |
99.51 |
0.605 |
| pilC | Acinetobacter baumannii D1279779 |
56.75 |
98.039 |
0.556 |
| pilC | Acinetobacter baylyi ADP1 |
55.138 |
97.794 |
0.539 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.369 |
99.755 |
0.502 |
| pilG | Neisseria meningitidis 44/76-A |
43.521 |
100 |
0.436 |
| pilG | Neisseria gonorrhoeae MS11 |
43.812 |
99.02 |
0.434 |
| pilC | Vibrio campbellii strain DS40M4 |
38.2 |
100 |
0.385 |
| pilC | Vibrio cholerae strain A1552 |
38.5 |
98.039 |
0.377 |