Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPY15_RS08860 Genome accession   NZ_CP053800
Coordinates   1962783..1963385 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain SO5Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957783..1968385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS08835 (HPY15_08850) sohB 1958334..1959395 (-) 1062 WP_046126581.1 protease SohB -
  HPY15_RS08840 (HPY15_08855) - 1959554..1960297 (+) 744 WP_001109954.1 YciK family oxidoreductase -
  HPY15_RS18405 - 1960400..1960780 (-) 381 WP_235290689.1 hypothetical protein -
  HPY15_RS18410 - 1960833..1961141 (-) 309 WP_229767848.1 hypothetical protein -
  HPY15_RS08850 (HPY15_08865) - 1961829..1962266 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  HPY15_RS08855 (HPY15_08870) - 1962408..1962656 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  HPY15_RS08860 (HPY15_08875) recR 1962783..1963385 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  HPY15_RS08865 (HPY15_08880) - 1963400..1963729 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  HPY15_RS08870 (HPY15_08885) dnaX 1963800..1965878 (-) 2079 WP_046126579.1 DNA polymerase III subunit gamma/tau -
  HPY15_RS08875 (HPY15_08890) apt 1965897..1966442 (-) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  HPY15_RS08880 (HPY15_08895) - 1966574..1966972 (-) 399 WP_001892232.1 YbaN family protein -
  HPY15_RS18685 - 1966972..1967103 (-) 132 WP_000013199.1 hypothetical protein -
  HPY15_RS08885 (HPY15_08900) - 1967273..1968364 (-) 1092 WP_032477943.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=394977 HPY15_RS08860 WP_001260579.1 1962783..1963385(-) (recR) [Vibrio cholerae strain SO5Y]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=394977 HPY15_RS08860 WP_001260579.1 1962783..1963385(-) (recR) [Vibrio cholerae strain SO5Y]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGTCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTCGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGCCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44

Multiple sequence alignment