Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FIV04_RS04455 | Genome accession | NZ_CP045338 |
| Coordinates | 975825..976121 (+) | Length | 98 a.a. |
| NCBI ID | WP_152468359.1 | Uniprot ID | A0A5P9B4Y2 |
| Organism | Vibrio sp. THAF190c | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 970825..981121
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV04_RS04445 (FIV04_04445) | - | 973287..973559 (+) | 273 | WP_004736083.1 | HU family DNA-binding protein | - |
| FIV04_RS04450 (FIV04_04450) | ppiD | 973776..975641 (+) | 1866 | WP_152468358.1 | peptidylprolyl isomerase | - |
| FIV04_RS04455 (FIV04_04455) | comEA | 975825..976121 (+) | 297 | WP_152468359.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FIV04_RS04460 (FIV04_04460) | rrtA | 976151..976684 (-) | 534 | WP_152468360.1 | rhombosortase | - |
| FIV04_RS04465 (FIV04_04465) | - | 976694..977311 (+) | 618 | WP_152468361.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| FIV04_RS04470 (FIV04_04470) | - | 977337..978680 (-) | 1344 | WP_152468362.1 | anti-phage deoxyguanosine triphosphatase | - |
| FIV04_RS04475 (FIV04_04475) | yfbR | 978726..979310 (-) | 585 | WP_150895442.1 | 5'-deoxynucleotidase | - |
| FIV04_RS04480 (FIV04_04480) | - | 979403..980620 (-) | 1218 | WP_150871535.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10687.22 Da Isoelectric Point: 5.0958
>NTDB_id=393481 FIV04_RS04455 WP_152468359.1 975825..976121(+) (comEA) [Vibrio sp. THAF190c]
MKSLYTLLVSLMLAFSTSVWADSPSKAELYEGIEVTVNINTATAEELSALLVGIGGKKAQEIVQYRDQNGAFQKPDDLTN
VKGIGAATVERNRKRIEL
MKSLYTLLVSLMLAFSTSVWADSPSKAELYEGIEVTVNINTATAEELSALLVGIGGKKAQEIVQYRDQNGAFQKPDDLTN
VKGIGAATVERNRKRIEL
Nucleotide
Download Length: 297 bp
>NTDB_id=393481 FIV04_RS04455 WP_152468359.1 975825..976121(+) (comEA) [Vibrio sp. THAF190c]
ATGAAAAGTCTATACACTCTTTTAGTGTCTCTTATGCTTGCCTTTAGTACTTCAGTTTGGGCAGATAGCCCGTCTAAAGC
AGAACTTTATGAAGGGATAGAGGTAACGGTAAATATCAACACGGCCACTGCGGAAGAGTTGTCGGCTTTGTTAGTTGGTA
TTGGAGGCAAAAAAGCGCAGGAGATTGTGCAGTATCGCGACCAGAATGGTGCATTTCAGAAGCCTGACGATTTAACGAAT
GTAAAAGGCATCGGTGCAGCAACCGTTGAGAGGAACCGAAAGAGAATCGAGCTGTAA
ATGAAAAGTCTATACACTCTTTTAGTGTCTCTTATGCTTGCCTTTAGTACTTCAGTTTGGGCAGATAGCCCGTCTAAAGC
AGAACTTTATGAAGGGATAGAGGTAACGGTAAATATCAACACGGCCACTGCGGAAGAGTTGTCGGCTTTGTTAGTTGGTA
TTGGAGGCAAAAAAGCGCAGGAGATTGTGCAGTATCGCGACCAGAATGGTGCATTTCAGAAGCCTGACGATTTAACGAAT
GTAAAAGGCATCGGTGCAGCAACCGTTGAGAGGAACCGAAAGAGAATCGAGCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
55.102 |
100 |
0.551 |
| comEA | Vibrio cholerae strain A1552 |
55.102 |
100 |
0.551 |
| comEA | Vibrio campbellii strain DS40M4 |
53.061 |
100 |
0.531 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.255 |
95.918 |
0.52 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
38.182 |
100 |
0.429 |
| comEA | Acinetobacter baylyi ADP1 |
48.193 |
84.694 |
0.408 |
| comE | Neisseria gonorrhoeae MS11 |
41.304 |
93.878 |
0.388 |
| comE | Neisseria gonorrhoeae MS11 |
41.304 |
93.878 |
0.388 |
| comE | Neisseria gonorrhoeae MS11 |
41.304 |
93.878 |
0.388 |
| comE | Neisseria gonorrhoeae MS11 |
41.304 |
93.878 |
0.388 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.667 |
61.224 |
0.378 |