Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GA660_RS12835 Genome accession   NZ_CP045129
Coordinates   2695806..2697032 (+) Length   408 a.a.
NCBI ID   WP_160241680.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690806..2702032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS12795 rimP 2691253..2691777 (-) 525 WP_005181784.1 ribosome maturation factor RimP -
  GA660_RS12820 secG 2692646..2692975 (-) 330 WP_005181783.1 preprotein translocase subunit SecG -
  GA660_RS12825 tpiA 2692989..2693780 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  GA660_RS12830 pilB 2694069..2695775 (+) 1707 WP_075167609.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GA660_RS12835 pilC 2695806..2697032 (+) 1227 WP_160241680.1 type II secretion system F family protein Machinery gene
  GA660_RS12840 pilD 2697032..2697892 (+) 861 WP_005181774.1 prepilin peptidase Machinery gene
  GA660_RS12845 coaE 2697903..2698511 (+) 609 WP_075175011.1 dephospho-CoA kinase -
  GA660_RS12850 - 2698508..2699428 (-) 921 WP_016659657.1 DMT family transporter -
  GA660_RS12855 rlmB 2699446..2700198 (-) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GA660_RS12860 - 2700304..2700627 (-) 324 WP_075167606.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44909.39 Da        Isoelectric Point: 9.9079

>NTDB_id=392145 GA660_RS12835 WP_160241680.1 2695806..2697032(+) (pilC) [Acinetobacter indicus strain TQ04]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVIGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=392145 GA660_RS12835 WP_160241680.1 2695806..2697032(+) (pilC) [Acinetobacter indicus strain TQ04]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAAAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCCGTGATTGT
CACGATTATTTTGATGGTCAAAGTGGTACCGGTATTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAAATGGTGGTAAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTCATCGGCTTTGCCATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCGCCAATTTTTGG
TGATCTGGTCTATAAAGCGATTATTGCGCGTTATAGCCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCGGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCGACCCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

84.314

100

0.843
  pilC Pseudomonas stutzeri DSM 10701

60.494

99.265

0.6
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.99

97.549

0.468
  pilG Neisseria meningitidis 44/76-A

47.99

97.549

0.468
  pilC Vibrio cholerae strain A1552

43.382

100

0.434
  pilC Vibrio campbellii strain DS40M4

42.752

99.755

0.426
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment