Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GA660_RS01675 Genome accession   NZ_CP045129
Coordinates   349638..351701 (+) Length   687 a.a.
NCBI ID   WP_160240901.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344638..356701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS01655 pilM 346686..347744 (+) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  GA660_RS01660 pilN 347744..348379 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA660_RS01665 pilO 348376..349095 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA660_RS01670 pilP 349095..349622 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA660_RS01675 pilQ 349638..351701 (+) 2064 WP_160240901.1 type IV pilus secretin PilQ Machinery gene
  GA660_RS01680 aroK 351738..352280 (+) 543 WP_075167858.1 shikimate kinase AroK -
  GA660_RS01685 aroB 352303..353385 (+) 1083 WP_016658450.1 3-dehydroquinate synthase -
  GA660_RS01690 - 353398..354234 (+) 837 WP_160240902.1 hypothetical protein -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74881.76 Da        Isoelectric Point: 4.9785

>NTDB_id=392119 GA660_RS01675 WP_160240901.1 349638..351701(+) (pilQ) [Acinetobacter indicus strain TQ04]
MNNTVKDFIFGDGITMNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLV
LDFDKAQQTLKQASIPVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAVTPVTVQQTAQGVSN
IGFQRGAEGEGQVVIDLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGS
YEYMAYQAENKLTISLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVP
WDQALDIILKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITQNKGASNSS
GSGSNDGRESLLSSRGSVSIDARTNTLIVNDTQDFIDKIRNMVDLLDVQVKQVMVEARIVTAQTDFSRELGIRWSANKLN
NRPVWGGDFQPSFDLGVDLGTGSAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQIPYQT
WSAESGTTTSFVDANLKLEVTPSITPDGKVQMELRIEKDTVGQLTQAGYLINTNELETNVLVNDGETVVLGGIFDDIQQN
QNERVPFLGELPVVGNLFRNNVKTNTQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=392119 GA660_RS01675 WP_160240901.1 349638..351701(+) (pilQ) [Acinetobacter indicus strain TQ04]
ATGAATAATACTGTGAAAGATTTTATTTTTGGGGATGGCATTACAATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGC
TGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCATTACCAATATTGTACCAATGCAAATTCCAGGACAAG
GTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTGCAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTG
CTGGATTTTGATAAAGCCCAGCAGACCTTAAAACAGGCCAGCATTCCGGTTGCGACTCGGGAAGCCAGCTCGGTTGATGT
CAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGAAGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATA
CTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGTAACGCCAGTGACGGTACAGCAGACGGCTCAAGGTGTATCGAAT
ATCGGCTTTCAGCGCGGTGCAGAAGGGGAAGGTCAGGTGGTAATTGACCTGGCAGGCAGCAACACCCCGGTCGATGTACA
ACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAATTCCTGCACATCTGGCACGCCGTTTAAACGTCAATG
ATTTTGCCACCCCGGTATCTACCATTGATGCACAAAATGATGGCGGTAATGGGGTAATTACCATTCAGTCTGCGGGAAGC
TATGAATACATGGCGTACCAGGCAGAAAATAAACTGACCATCAGTCTGAAACGTCCGGTAGATAAGAACCCGTTCAAACC
GCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTTCCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTAC
TGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACAGTACAAGGCAATATCACCTTACGTCTCAAAGATGTGCCG
TGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAATCTGGATAAACGCCGTAATGGCAATGTGATCTGGATTGCACC
CGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGATTGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCG
AATATATTCAGTTAAATTATGCCAAGGCTGCTGATATCGAGAAACTGATTACTCAGAATAAAGGCGCCTCAAACTCTAGC
GGATCAGGCAGTAATGATGGGCGAGAAAGTTTATTGAGTTCTCGAGGGTCAGTTTCGATTGATGCCCGTACCAATACCTT
AATTGTGAATGATACTCAAGACTTTATTGATAAAATTCGAAATATGGTGGATTTGCTAGATGTTCAGGTCAAGCAGGTCA
TGGTAGAGGCTCGTATTGTTACCGCTCAAACTGACTTTTCCCGTGAGTTGGGGATTCGCTGGAGTGCCAATAAATTAAAT
AATCGCCCGGTATGGGGAGGAGACTTCCAACCAAGCTTTGACTTGGGGGTAGATTTAGGTACAGGCTCTGCGGGGACATT
TAACTTTGGGTTATTGAAAATTTCAGATTATATGCTGAATCTGGAGTTAACTGCTTTACAGGCGGATGGGCATGGGGAAG
TATTGTCTGCACCTAAAGTCCTGACAGGCGATAAACAGAAAGCCTATATTCTACGAGGTGATCAAATTCCATATCAGACT
TGGAGTGCAGAATCTGGAACAACCACAAGTTTTGTTGACGCCAACTTAAAACTTGAAGTGACCCCAAGCATTACTCCAGA
TGGAAAAGTCCAAATGGAATTAAGAATTGAAAAAGATACAGTAGGGCAGTTGACTCAAGCAGGTTATCTCATCAATACCA
ATGAATTGGAAACCAATGTGTTAGTCAATGATGGTGAAACTGTCGTGCTCGGTGGTATTTTTGATGATATTCAGCAGAAC
CAGAATGAGCGGGTTCCATTTTTAGGGGAATTGCCAGTGGTGGGTAACTTGTTTAGAAATAATGTGAAAACCAATACTCA
AACTGAGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

AMIN domain (AMIN)

(55-136)

Bacterial type II and III secretion system protein (Secretin)

(525-679)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

66.621

100

0.703
  pilQ Acinetobacter baumannii strain A118

66.483

100

0.702
  comQ Acinetobacter baylyi ADP1

64.598

100

0.667
  pilQ Pseudomonas aeruginosa PAK

40.73

99.709

0.406
  pilQ Legionella pneumophila strain ERS1305867

38.776

99.854

0.387
  pilQ Legionella pneumophila strain Lp02

38.776

99.854

0.387

Multiple sequence alignment