Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GA660_RS01655 Genome accession   NZ_CP045129
Coordinates   346686..347744 (+) Length   352 a.a.
NCBI ID   WP_104505685.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341686..352744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS01640 mraY 341909..343027 (+) 1119 WP_160240898.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  GA660_RS01645 - 343093..343896 (+) 804 WP_160240899.1 putative RNA methyltransferase -
  GA660_RS01650 ponA 343938..346514 (-) 2577 WP_160240900.1 penicillin-binding protein PBP1a -
  GA660_RS01655 pilM 346686..347744 (+) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  GA660_RS01660 pilN 347744..348379 (+) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  GA660_RS01665 pilO 348376..349095 (+) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  GA660_RS01670 pilP 349095..349622 (+) 528 WP_104489345.1 pilus assembly protein PilP Machinery gene
  GA660_RS01675 pilQ 349638..351701 (+) 2064 WP_160240901.1 type IV pilus secretin PilQ Machinery gene
  GA660_RS01680 aroK 351738..352280 (+) 543 WP_075167858.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38981.65 Da        Isoelectric Point: 4.5587

>NTDB_id=392115 GA660_RS01655 WP_104505685.1 346686..347744(+) (pilM) [Acinetobacter indicus strain TQ04]
MRRLYRKPSKGLIGVDISSTSVKLLELSVKNDRYWVESYALVPLPEGSVVEKNILNPEAVGDALERAFNLANTPTTAAAL
AIPTSMVISKTIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRLENVESRCEAIEL
AGLTPKVADVESFAIENAFKVFADTLPMGVNTIGVLDIGHTMTTLSVLKDNKIIYTREQVFGGKQLTQEIQNRYGLSFEE
AGRAKKSRTLPDDYDIEVLEPFLEAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSSKIDIKRIESDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=392115 GA660_RS01655 WP_104505685.1 346686..347744(+) (pilM) [Acinetobacter indicus strain TQ04]
GTGCGCAGGTTATATCGTAAACCGAGTAAGGGGTTAATAGGTGTAGATATTAGTTCTACTTCTGTTAAGTTATTGGAGCT
CTCTGTAAAGAATGATCGTTACTGGGTGGAAAGTTACGCCTTGGTACCGCTCCCAGAGGGCAGTGTGGTTGAGAAAAATA
TTCTGAATCCTGAAGCTGTAGGGGATGCGCTCGAGCGTGCCTTTAATTTGGCCAATACACCGACAACAGCTGCCGCTTTA
GCGATTCCAACCTCAATGGTAATTAGCAAGACCATTGAGATGGATGCCGATATGACGGATGACGAACGTGAAGTTCAAAT
CCGGATGGATGCAGAGCAATATATTCCTTTCCCATTAGATGAAGTTAGCCTGGACTTTGAGGTGCTGCCTGATCGTCTGG
CCAATCCAAACCGGGTCAATGTTTTGCTGGTGGCGACACGACTGGAAAATGTCGAGAGTCGCTGTGAAGCGATTGAACTG
GCCGGTTTAACCCCAAAAGTGGCAGATGTCGAAAGCTTTGCCATTGAAAATGCCTTTAAAGTCTTCGCCGATACCTTGCC
GATGGGGGTAAATACCATTGGTGTGTTAGACATTGGTCATACTATGACCACGCTGTCGGTACTCAAAGACAATAAAATTA
TCTATACCCGCGAGCAGGTCTTTGGTGGCAAGCAGCTGACCCAGGAAATCCAGAACCGTTATGGTCTGTCCTTTGAAGAA
GCCGGCCGCGCCAAGAAAAGCCGTACCTTGCCAGATGATTATGATATTGAAGTGTTGGAGCCATTCCTTGAGGCGGTGGT
GCAGCAGGCGGCACGTTCGCTGCAGTTCTTCTTCTCCTCATCGCAGTTTAATGAAATTGACCATATTCTGCTGGCCGGTG
GGAATGCCAATATTCCAGGCCTGGCCAAGCTACTACAGCAAAAACTGGGTTACCGCGTCACCATTGCCAATCCGTTTTTA
CAGATGGGTTTCTCCTCCAAAATTGATATTAAAAGAATTGAAAGCGATGCCTCTTCATTGATGGTGGCATGTGGCTTGGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

84.659

100

0.847
  comM Acinetobacter nosocomialis M2

84.659

100

0.847
  comM Acinetobacter baylyi ADP1

78.693

100

0.787
  pilM Legionella pneumophila strain ERS1305867

41.243

100

0.415

Multiple sequence alignment