Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GA646_RS13470 | Genome accession | NZ_CP045127 |
| Coordinates | 2646000..2647226 (+) | Length | 408 a.a. |
| NCBI ID | WP_160255747.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain XG03 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2641000..2652226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GA646_RS13430 | rimP | 2641448..2641972 (-) | 525 | WP_005181784.1 | ribosome maturation factor RimP | - |
| GA646_RS13455 | secG | 2642841..2643170 (-) | 330 | WP_016659654.1 | preprotein translocase subunit SecG | - |
| GA646_RS13460 | tpiA | 2643184..2643975 (-) | 792 | WP_160255746.1 | triose-phosphate isomerase | - |
| GA646_RS13465 | pilB | 2644263..2645969 (+) | 1707 | WP_075167609.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GA646_RS13470 | pilC | 2646000..2647226 (+) | 1227 | WP_160255747.1 | type II secretion system F family protein | Machinery gene |
| GA646_RS13475 | pilD | 2647226..2648086 (+) | 861 | WP_160255748.1 | prepilin peptidase | Machinery gene |
| GA646_RS13480 | coaE | 2648097..2648705 (+) | 609 | WP_005181773.1 | dephospho-CoA kinase | - |
| GA646_RS13485 | - | 2648702..2649622 (-) | 921 | WP_160255749.1 | DMT family transporter | - |
| GA646_RS13490 | rlmB | 2649640..2650392 (-) | 753 | WP_005181769.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| GA646_RS13495 | - | 2650498..2650821 (-) | 324 | WP_005181767.1 | pyrimidine/purine nucleoside phosphorylase | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44910.41 Da Isoelectric Point: 9.8333
>NTDB_id=392103 GA646_RS13470 WP_160255747.1 2646000..2647226(+) (pilC) [Acinetobacter indicus strain XG03]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDWVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLLFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDWVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLLFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=392103 GA646_RS13470 WP_160255747.1 2646000..2647226(+) (pilC) [Acinetobacter indicus strain XG03]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGGAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGGAATACTTTTGCAGGCGCACTGCGTAAATATCCACAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACTGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAAAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCCGTGATTGT
CACGATTATTTTGATGGTCAAAGTGGTACCGGTATTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTGATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCTGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGGAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGGAATACTTTTGCAGGCGCACTGCGTAAATATCCACAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACTGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAAAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCCGTGATTGT
CACGATTATTTTGATGGTCAAAGTGGTACCGGTATTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTGATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCTGTTTGCCATGCGGGTCACGGATAAATTCCCTTCGATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
87.99 |
100 |
0.88 |
| pilC | Acinetobacter baylyi ADP1 |
83.824 |
100 |
0.838 |
| pilC | Pseudomonas stutzeri DSM 10701 |
60.442 |
99.755 |
0.603 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.593 |
99.265 |
0.522 |
| pilG | Neisseria gonorrhoeae MS11 |
47.99 |
97.549 |
0.468 |
| pilG | Neisseria meningitidis 44/76-A |
47.99 |
97.549 |
0.468 |
| pilC | Vibrio cholerae strain A1552 |
42.892 |
100 |
0.429 |
| pilC | Vibrio campbellii strain DS40M4 |
42.574 |
99.02 |
0.422 |