Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F9277_RS02115 Genome accession   NZ_CP045070
Coordinates   411344..412567 (-) Length   407 a.a.
NCBI ID   WP_152163050.1    Uniprot ID   -
Organism   Vibrio harveyi strain WXL538     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406344..417567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9277_RS02075 (F9277_02075) rpsP 406400..406648 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  F9277_RS02080 (F9277_02080) rimM 406677..407225 (+) 549 WP_005446245.1 ribosome maturation factor RimM -
  F9277_RS02085 (F9277_02085) trmD 407253..407996 (+) 744 WP_005446247.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F9277_RS02090 (F9277_02090) rplS 408038..408391 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  F9277_RS02095 (F9277_02095) yacG 408762..408956 (-) 195 WP_005446249.1 DNA gyrase inhibitor YacG -
  F9277_RS02100 (F9277_02100) zapD 409019..409759 (-) 741 WP_152163049.1 cell division protein ZapD -
  F9277_RS02105 (F9277_02105) coaE 409787..410401 (-) 615 WP_069217917.1 dephospho-CoA kinase -
  F9277_RS02110 (F9277_02110) pilD 410402..411271 (-) 870 WP_045488712.1 A24 family peptidase Machinery gene
  F9277_RS02115 (F9277_02115) pilC 411344..412567 (-) 1224 WP_152163050.1 type II secretion system F family protein Machinery gene
  F9277_RS02120 (F9277_02120) pilB 412601..414286 (-) 1686 WP_152163051.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F9277_RS02125 (F9277_02125) pilA 414286..414714 (-) 429 WP_009698754.1 type IV pilin protein Machinery gene
  F9277_RS02135 (F9277_02135) nadC 414979..415866 (-) 888 WP_029790346.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F9277_RS02140 (F9277_02140) ampD 415959..416510 (+) 552 WP_069217919.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44913.14 Da        Isoelectric Point: 10.3829

>NTDB_id=391666 F9277_RS02115 WP_152163050.1 411344..412567(-) (pilC) [Vibrio harveyi strain WXL538]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTKVIPEFEKMFTGFGAELPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLTARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPVYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=391666 F9277_RS02115 WP_152163050.1 411344..412567(-) (pilC) [Vibrio harveyi strain WXL538]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGTAACGT
GCTCGCAATGACAGAAGTCGAGGTAAGAGAGCGCCTTGATGCTCAGCACATCAAGATAAAAAAACTCAAAAAAGGCAGTA
TTTCTTTTATCACCAAGATAAGTCATCGAGTAAAAGGCAAAGACATTACGGTGTTTACTCGCCAAATCGCCACCATGTTG
ATGACTGGCGTCCCTATTGTTCAAGCACTCAAGTTAGTTTCAGAGAACCATAAAAAAGCTGAAATGAAATCGATTCTAAT
GAGTGTGACGCGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGTACCGCTAGCACGCACTTTGATCCACTTT
ACACCGACTTAATCGCAACAGGTGAGCAGTCCGGTAACTTATCCCAAGTCTTTGAGCGTCTGGCGACCTACCGAGAAAAA
AGTGAGCAGTTGCGTGCAAAGGTTATTAAAGCGCTCATTTACCCAGCGATGGTGGTATTAGTAGCACTTGGGGTTTCTTA
TTTAATGCTGACAAAGGTTATTCCTGAGTTTGAAAAAATGTTTACAGGTTTTGGTGCCGAATTACCCGCCTTCACCCAGA
TGGTACTCAACCTTTCTGCTTGGACCCAAAATTGGGGTCCCTTCATTGGGCTGAGCTTTGTGAGCTTACTCATTTCTGGC
AAAATCATGTCACAACGCTCCGACTCATTTCGTCTTTTGACTGCACGGTCGAGTTTAAGAGTACCTATTTTAGGACCAGT
TTTATCCAAAGCTGCCATTGCGAAGTTTAGCCGTACTTTGGCGACCAGTTTTAGCGCAGGTATTCCTATCCTAACCGCCT
TGAAAACTACCTCAAAAACCTCTGGTAACATGCATTATCAATTGGCAATCGAAGAGGTATATCGAGATACTGCCGCTGGT
ATGCCAGTGTACATTGCCATGCGTAACTGTAACGTCTTCCCAGAATTGGTATTGCAAATGGTCATGATTGGTGAAGAGTC
AGGTCGCTTAGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTCGATAACACCGTCGACAACCTAAGTA
AGATTTTGGAACCGTTGATCATTGTTTTTCTGGGTGTCGTTGTCGGTGGTTTGGTGACAGCAATGTACTTACCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

98.034

100

0.98
  pilC Vibrio cholerae strain A1552

73.75

98.28

0.725
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilG Neisseria gonorrhoeae MS11

39.312

100

0.393
  pilC Legionella pneumophila strain ERS1305867

39.109

99.263

0.388
  pilG Neisseria meningitidis 44/76-A

38.48

100

0.386

Multiple sequence alignment