Detailed information NTG0391665

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F9277_RS02110
• Genome accession: NZ_CP045070
• Coordinates: 410402..411271 (-)
• Length: 289 a.a.
• NCBI ID: WP_045488712.1
• Uniprot ID: A0A9X3MI55
• Organism: Vibrio harveyi strain WXL538
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 405402..416271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F9277_RS02075 (F9277_02075)	rpsP	406400..406648 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
F9277_RS02080 (F9277_02080)	rimM	406677..407225 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
F9277_RS02085 (F9277_02085)	trmD	407253..407996 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
F9277_RS02090 (F9277_02090)	rplS	408038..408391 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
F9277_RS02095 (F9277_02095)	yacG	408762..408956 (-)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
F9277_RS02100 (F9277_02100)	zapD	409019..409759 (-)	741	WP_152163049.1	cell division protein ZapD	-
F9277_RS02105 (F9277_02105)	coaE	409787..410401 (-)	615	WP_069217917.1	dephospho-CoA kinase	-
F9277_RS02110 (F9277_02110)	pilD	410402..411271 (-)	870	WP_045488712.1	A24 family peptidase	Machinery gene
F9277_RS02115 (F9277_02115)	pilC	411344..412567 (-)	1224	WP_152163050.1	type II secretion system F family protein	Machinery gene
F9277_RS02120 (F9277_02120)	pilB	412601..414286 (-)	1686	WP_152163051.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F9277_RS02125 (F9277_02125)	pilA	414286..414714 (-)	429	WP_009698754.1	type IV pilin protein	Machinery gene
F9277_RS02135 (F9277_02135)	nadC	414979..415866 (-)	888	WP_029790346.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32576.76 Da
• Isoelectric Point: 7.5715

>NTDB_id=391665 F9277_RS02110 WP_045488712.1 410402..411271(-) (pilD) [Vibrio harveyi strain WXL538]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISHVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=391665 F9277_RS02110 WP_045488712.1 410402..411271(-) (pilD) [Vibrio harveyi strain WXL538]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCATGTAAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	96.886	100	0.969
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436