Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | F9277_RS02125 | Genome accession | NZ_CP045070 |
| Coordinates | 414286..414714 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio harveyi strain WXL538 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 409286..419714
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9277_RS02105 (F9277_02105) | coaE | 409787..410401 (-) | 615 | WP_069217917.1 | dephospho-CoA kinase | - |
| F9277_RS02110 (F9277_02110) | pilD | 410402..411271 (-) | 870 | WP_045488712.1 | A24 family peptidase | Machinery gene |
| F9277_RS02115 (F9277_02115) | pilC | 411344..412567 (-) | 1224 | WP_152163050.1 | type II secretion system F family protein | Machinery gene |
| F9277_RS02120 (F9277_02120) | pilB | 412601..414286 (-) | 1686 | WP_152163051.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| F9277_RS02125 (F9277_02125) | pilA | 414286..414714 (-) | 429 | WP_009698754.1 | type IV pilin protein | Machinery gene |
| F9277_RS02135 (F9277_02135) | nadC | 414979..415866 (-) | 888 | WP_029790346.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| F9277_RS02140 (F9277_02140) | ampD | 415959..416510 (+) | 552 | WP_069217919.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| F9277_RS02145 (F9277_02145) | pdhR | 416914..417681 (+) | 768 | WP_005446261.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=391668 F9277_RS02125 WP_009698754.1 414286..414714(-) (pilA) [Vibrio harveyi strain WXL538]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=391668 F9277_RS02125 WP_009698754.1 414286..414714(-) (pilA) [Vibrio harveyi strain WXL538]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCAGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACCTTCATTGCAGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |