Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSM_RS13255 Genome accession   NC_014803
Coordinates   2891596..2892825 (+) Length   409 a.a.
NCBI ID   WP_013465935.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. SM9913     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886596..2897825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSM_RS13235 (PSM_A2706) ampE 2887756..2888607 (-) 852 WP_013465931.1 beta-lactamase regulator AmpE -
  PSM_RS13240 (PSM_A2707) ampD 2888895..2889440 (-) 546 WP_013465932.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PSM_RS13245 (PSM_A2708) nadC 2889701..2890546 (+) 846 WP_013465933.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PSM_RS13250 (PSM_A2709) - 2891059..2891481 (+) 423 WP_013465934.1 pilin -
  PSM_RS13255 (PSM_A2710) pilC 2891596..2892825 (+) 1230 WP_013465935.1 type II secretion system F family protein Machinery gene
  PSM_RS13260 (PSM_A2711) pilD 2893050..2893961 (+) 912 WP_041695804.1 A24 family peptidase Machinery gene
  PSM_RS13265 (PSM_A2712) coaE 2893964..2894593 (+) 630 WP_013465937.1 dephospho-CoA kinase -
  PSM_RS13270 (PSM_A2713) pilB 2894729..2896405 (+) 1677 WP_013465938.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSM_RS13275 (PSM_A2714) yacG 2896470..2896700 (+) 231 WP_008114915.1 DNA gyrase inhibitor YacG -
  PSM_RS13280 (PSM_A2715) - 2896979..2897443 (-) 465 WP_008114914.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44353.52 Da        Isoelectric Point: 9.9459

>NTDB_id=39159 PSM_RS13255 WP_013465935.1 2891596..2892825(+) (pilC) [Pseudoalteromonas sp. SM9913]
MAKKQQEKGLDTFQWVGVSARGKKLEGELTGSSIALVKAKLRKQGITPSKVKRKAKPIFGIKSVQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGSGSTNKSVSKLMSAIGDEVKAGLPLSNVLRKYPRYFDELYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPISVLVVAGIVTSILLIFVVPQFQEIFNGFGAELPAFTLFVIAISEFMQSYWWMIVLAVMVFG
YVFKEAKLRSLALRDATDRAILKLPVVGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEV
SSGNQMNWAMRNSKIFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=39159 PSM_RS13255 WP_013465935.1 2891596..2892825(+) (pilC) [Pseudoalteromonas sp. SM9913]
ATGGCAAAAAAGCAGCAAGAAAAAGGCCTTGATACCTTTCAATGGGTAGGTGTAAGCGCTCGAGGTAAGAAGCTTGAGGG
CGAGCTTACGGGATCTAGCATTGCACTAGTCAAAGCAAAATTACGCAAGCAAGGCATTACCCCCTCTAAAGTAAAGCGTA
AAGCCAAGCCCATATTTGGTATAAAAAGCGTACAAAAAATCACCCCAAAAGATATTGCTTTAGTGACAAGGCAGATAGCC
ACTATGCTGATGGCGGGTGTACCACTAATTCAGTCAATTGAAATGATAGGCTCAGGCTCCACTAATAAAAGCGTGAGTAA
GCTTATGAGTGCTATTGGCGATGAAGTCAAAGCAGGGTTGCCGCTTTCTAACGTACTTAGAAAATACCCTCGCTATTTTG
ATGAATTATATTGCGATTTAGTGGCCTCTGGTGAGCAATCTGGTGCACTGGATAAAATATTTGACCGCGTTGCGCTATAT
AAAGAAAAGTCAGAGGCGCTGAAATCAAAAATTAAAAAAGCCATGTTTTATCCAATATCAGTTTTAGTGGTTGCAGGTAT
TGTAACTTCTATCTTGCTGATATTTGTGGTACCGCAATTTCAGGAGATTTTCAATGGCTTTGGTGCAGAGCTGCCTGCCT
TTACCTTATTTGTAATCGCCATTTCCGAGTTCATGCAATCTTATTGGTGGATGATAGTATTAGCTGTGATGGTATTTGGT
TACGTATTTAAAGAAGCAAAACTTAGAAGCTTAGCGCTCAGGGATGCGACAGACCGCGCCATACTTAAACTGCCTGTTGT
CGGCATGATTTTAAATAAGGCCGCCGTGGCGCGTTATGCACGTACCCTATCGACCACCTTTGCAGCCGGTGTACCGCTGG
TAGATGCGCTTGATTCCGCAGCCGGTGCCTCAGGAAACGCAGTTTACCGTTATGCTATTTTAGAAATAAAAGCCGAGGTA
AGCTCTGGTAACCAAATGAATTGGGCGATGCGCAACTCTAAAATATTCCCTGATATGGTGGTACAAATGGTCGCCATTGG
TGAAGAGTCAGGATCGCTTGATGGCATGCTGGCTAAAGTTGCCACTATCTACGAGCAAGAAGTAGATGACGCCGTAGATG
GCCTATCGAGCTTACTTGAGCCGTTAATAATGGCGGTGCTTGGTGTATTAGTGGGTGGCTTAATTGTGGCCATGTACTTA
CCTATTTTCCAACTAGGTTCAGTTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.713

97.066

0.599
  pilC Acinetobacter baylyi ADP1

54.902

99.756

0.548
  pilC Legionella pneumophila strain ERS1305867

55.276

97.311

0.538
  pilC Acinetobacter baumannii D1279779

54.5

97.8

0.533
  pilC Vibrio cholerae strain A1552

44.254

100

0.443
  pilG Neisseria meningitidis 44/76-A

44.246

95.599

0.423
  pilC Vibrio campbellii strain DS40M4

43.25

97.8

0.423
  pilG Neisseria gonorrhoeae MS11

43.99

95.599

0.421

Multiple sequence alignment