Detailed information NTG0039160

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSM_RS13260
• Genome accession: NC_014803
• Coordinates: 2893050..2893961 (+)
• Length: 303 a.a.
• NCBI ID: WP_041695804.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. SM9913
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2888050..2898961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSM_RS13240 (PSM_A2707)	ampD	2888895..2889440 (-)	546	WP_013465932.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PSM_RS13245 (PSM_A2708)	nadC	2889701..2890546 (+)	846	WP_013465933.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PSM_RS13250 (PSM_A2709)	-	2891059..2891481 (+)	423	WP_013465934.1	pilin	-
PSM_RS13255 (PSM_A2710)	pilC	2891596..2892825 (+)	1230	WP_013465935.1	type II secretion system F family protein	Machinery gene
PSM_RS13260 (PSM_A2711)	pilD	2893050..2893961 (+)	912	WP_041695804.1	A24 family peptidase	Machinery gene
PSM_RS13265 (PSM_A2712)	coaE	2893964..2894593 (+)	630	WP_013465937.1	dephospho-CoA kinase	-
PSM_RS13270 (PSM_A2713)	pilB	2894729..2896405 (+)	1677	WP_013465938.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSM_RS13275 (PSM_A2714)	yacG	2896470..2896700 (+)	231	WP_008114915.1	DNA gyrase inhibitor YacG	-
PSM_RS13280 (PSM_A2715)	-	2896979..2897443 (-)	465	WP_008114914.1	Spy/CpxP family protein refolding chaperone	-
PSM_RS13285 (PSM_A2716)	-	2897612..2898301 (+)	690	WP_013465939.1	response regulator transcription factor	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33480.81 Da
• Isoelectric Point: 7.1048

>NTDB_id=39160 PSM_RS13260 WP_041695804.1 2893050..2893961(+) (pilD) [Pseudoalteromonas sp. SM9913]
MQSLFIDITAAMQNHLWFYLTTIGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAKQATEHTTDTFNLV
KPNSCCPKCKAAIKPWQNIPIFSWVFLKGKCATCDNPISVRYPIVEAITAILSLVVAYAFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGAILGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWFTMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=39160 PSM_RS13260 WP_041695804.1 2893050..2893961(+) (pilD) [Pseudoalteromonas sp. SM9913]
ATGCAAAGTCTTTTTATTGATATCACCGCCGCGATGCAAAACCATTTATGGTTTTACTTAACCACTATTGGACTGGTGAG
TTTATGTATCGGTAGCTTTTTAAATGTAGTGATATATCGCTTGCCACTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTACTAGCCGATGAACTAACCAGCCCAAAGGCTAAACAGGCCACTGAACACACTACTGACACGTTTAATTTAGTT
AAACCCAACTCATGTTGCCCAAAGTGCAAAGCAGCCATTAAGCCATGGCAAAACATCCCTATATTTAGTTGGGTATTTTT
AAAAGGTAAATGTGCAACCTGTGATAACCCAATTTCAGTGCGTTACCCAATCGTTGAAGCCATTACCGCTATTTTAAGTC
TAGTTGTTGCGTACGCTTTTGGCGCTACAGAGCAGGCTTTATTGTACATTGTAGTTACTTGGGCGTTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCGGACCAGCTTACTTTGCCACTTTTATGGTTAGCACTAATAGCCTCTGTTAT
GGGTTATACCATTGCCCCTAGCGATGCCATTATTGGCGCAGCATGTGGCTATTTAAGCTTGTGGAGTGTGTTTTGGTTGT
TTAAATTAATAACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAATTACTTGCCGTATTTGGAGCCATACTGGGTTGG
CAATCGTTATTGACCATTATTTTGCTCTCAAGCGTAGTTGGCGCTGTAATTGGCATTGCTCTACTTAGTATTCAAGGTAA
AGACAAAGCAACCCCCATTCCTTTTGGTCCTTACTTAGCAATAGCCGGTTGGTTCACTATGCTATGGGGCACGCAACTGC
AAAACAGCTATTTTAATTTTATTGGCTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	50.512	96.7	0.488
pilD	Acinetobacter nosocomialis M2	50.171	96.7	0.485
pilD	Vibrio cholerae strain A1552	50.871	94.719	0.482
pilD	Vibrio campbellii strain DS40M4	49.655	95.71	0.475
pilD	Neisseria gonorrhoeae MS11	44.195	88.119	0.389