Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F9Z45_RS16615 Genome accession   NZ_CP044975
Coordinates   3576299..3577516 (+) Length   405 a.a.
NCBI ID   WP_159607833.1    Uniprot ID   A0A6P1IHD8
Organism   Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3571299..3582516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9Z45_RS16590 (F9Z45_16585) rpmA 3572450..3572707 (-) 258 WP_056273119.1 50S ribosomal protein L27 -
  F9Z45_RS16595 (F9Z45_16590) rplU 3572721..3573032 (-) 312 WP_159608778.1 50S ribosomal protein L21 -
  F9Z45_RS16600 (F9Z45_16595) - 3573305..3574234 (+) 930 WP_159608779.1 polyprenyl synthetase family protein -
  F9Z45_RS16610 (F9Z45_16605) pilB 3574533..3576266 (+) 1734 WP_159607832.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F9Z45_RS16615 (F9Z45_16610) pilC 3576299..3577516 (+) 1218 WP_159607833.1 type II secretion system F family protein Machinery gene
  F9Z45_RS16620 (F9Z45_16615) - 3577516..3578376 (+) 861 WP_159607834.1 A24 family peptidase -
  F9Z45_RS16625 (F9Z45_16620) coaE 3578373..3578990 (+) 618 WP_159607835.1 dephospho-CoA kinase -
  F9Z45_RS16630 (F9Z45_16625) zapD 3579033..3579788 (+) 756 WP_159607836.1 cell division protein ZapD -
  F9Z45_RS16635 (F9Z45_16630) - 3579808..3580011 (+) 204 WP_159607837.1 DNA gyrase inhibitor YacG -
  F9Z45_RS16640 (F9Z45_16635) - 3580027..3580488 (-) 462 WP_159607838.1 NUDIX domain-containing protein -
  F9Z45_RS16645 (F9Z45_16640) - 3580485..3581363 (-) 879 WP_159607839.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44257.93 Da        Isoelectric Point: 9.3706

>NTDB_id=391075 F9Z45_RS16615 WP_159607833.1 3576299..3577516(+) (pilC) [Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)]
MATAATKSVKDAVFEWEGKDRNGKTVRGETRAVGENQVLAALRRQGIVPGKVKKRRMNSGKRIKPKDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNPNPSVTKLLNDIRTDVETGTSLSAAFRKNPLYFDSLYCNLVEAGEAAGILEQLLDRLAVYMEKT
EALKSKIKSALMYPIAVIIVAFVVVAVIMIFVIPSFKEVFSSFGADLPAPTLFVIAMSEFFTAYWWLIFGGLGGGFYFFM
QAWRRNEKVQHFMDRVLLKLPIFGVLIEKSVIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYSMATERIQQEVSTGT
SLTNAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=391075 F9Z45_RS16615 WP_159607833.1 3576299..3577516(+) (pilC) [Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2)]
ATGGCAACCGCGGCAACAAAGAGCGTCAAAGACGCAGTTTTCGAGTGGGAAGGCAAGGACCGCAACGGGAAGACTGTGCG
CGGCGAGACCCGCGCAGTGGGAGAGAACCAGGTGCTTGCTGCATTGCGACGGCAGGGCATTGTTCCAGGCAAGGTGAAAA
AGCGCCGAATGAATTCGGGCAAACGCATCAAGCCCAAGGACATTGCCATTTTCACGCGACAACTGGCCACCATGATGAAG
GCTGGCGTGCCCTTGCTTCAGTCGTTCGACATCGTCGGGCGAGGCAACCCCAACCCAAGCGTGACCAAGCTGCTGAACGA
CATTCGCACCGACGTGGAAACGGGCACTTCGCTCAGCGCCGCGTTCCGCAAGAACCCGCTCTATTTCGACAGCCTCTATT
GCAATCTGGTCGAAGCGGGTGAAGCGGCCGGTATCCTTGAACAATTGCTGGATCGCCTGGCGGTCTACATGGAGAAGACC
GAAGCGCTCAAATCAAAAATCAAGTCGGCGCTGATGTACCCCATCGCCGTGATCATCGTGGCATTCGTCGTGGTCGCCGT
GATCATGATTTTCGTGATCCCGTCATTCAAGGAAGTGTTCTCTTCTTTCGGCGCGGACCTCCCTGCCCCGACCTTGTTTG
TGATCGCGATGAGCGAATTTTTCACCGCTTATTGGTGGTTGATCTTTGGTGGACTGGGCGGAGGTTTCTATTTCTTCATG
CAGGCGTGGCGCCGCAACGAGAAGGTGCAGCATTTCATGGACCGCGTGCTGCTGAAACTGCCGATCTTCGGCGTGCTGAT
CGAAAAATCGGTCATTGCCCGCTGGACCCGCACGCTCTCCACGATGTTTGCGGCCGGGGTACCTTTGGTAGAAGCGCTCG
ACTCGGTGGGTGGCGCCTCTGGCAATTCGGTTTATTCGATGGCCACTGAACGCATTCAGCAGGAGGTTTCGACCGGCACA
AGCCTGACCAACGCAATGACCAACGCCAACATCTTTCCATCGATGGTGCTGCAGATGTGCGCGATCGGTGAAGAGTCGGG
CTCAATTGATCACATGCTGGGCAAAGCCGCTGATTTTTATGAAGCCGAGGTCGATGACATGGTTGCAGGCATTTCCAGCT
TGATGGAGCCCATCATCATCGTGGTGCTGGGCACCGTCATCGGCGGTATCGTTGTATCAATGTACCTTCCCATCTTCAAA
TTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1IHD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

51.637

98.025

0.506
  pilG Neisseria meningitidis 44/76-A

51.385

98.025

0.504
  pilC Legionella pneumophila strain ERS1305867

51.263

97.778

0.501
  pilC Acinetobacter baylyi ADP1

49.389

100

0.499
  pilC Acinetobacter baumannii D1279779

48.622

98.519

0.479
  pilC Vibrio cholerae strain A1552

41.032

100

0.412
  pilC Vibrio campbellii strain DS40M4

39.5

98.765

0.39
  pilC Thermus thermophilus HB27

36.957

100

0.378

Multiple sequence alignment