Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F9K07_RS25210 Genome accession   NZ_CP044549
Coordinates   5455710..5456927 (+) Length   405 a.a.
NCBI ID   WP_159596021.1    Uniprot ID   -
Organism   Hydrogenophaga sp. BPS33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5450710..5461927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9K07_RS25185 (F9K07_25140) rpmA 5451897..5452154 (-) 258 WP_159596019.1 50S ribosomal protein L27 -
  F9K07_RS25190 (F9K07_25145) rplU 5452168..5452479 (-) 312 WP_159597100.1 50S ribosomal protein L21 -
  F9K07_RS25195 (F9K07_25150) - 5452673..5453656 (+) 984 WP_236581509.1 polyprenyl synthetase family protein -
  F9K07_RS25205 (F9K07_25160) pilB 5453942..5455675 (+) 1734 WP_159596020.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F9K07_RS25210 (F9K07_25165) pilC 5455710..5456927 (+) 1218 WP_159596021.1 type II secretion system F family protein Machinery gene
  F9K07_RS25215 (F9K07_25170) - 5456927..5457781 (+) 855 WP_159596022.1 A24 family peptidase -
  F9K07_RS25220 (F9K07_25175) coaE 5457778..5458392 (+) 615 WP_159596023.1 dephospho-CoA kinase -
  F9K07_RS25225 (F9K07_25180) zapD 5458436..5459191 (+) 756 WP_159597102.1 cell division protein ZapD -
  F9K07_RS25230 (F9K07_25185) - 5459199..5459402 (+) 204 WP_159596024.1 DNA gyrase inhibitor YacG -
  F9K07_RS25235 (F9K07_25190) - 5459442..5459885 (-) 444 WP_328794067.1 NUDIX domain-containing protein -
  F9K07_RS25240 (F9K07_25195) - 5459987..5460865 (-) 879 WP_159596026.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44330.02 Da        Isoelectric Point: 9.1426

>NTDB_id=390959 F9K07_RS25210 WP_159596021.1 5455710..5456927(+) (pilC) [Hydrogenophaga sp. BPS33]
MATAVSKSVKDIVFEWEGKDRNGKPVRGETRAGGENQVQAALRRQGIVPSKIKKRRMSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPNVTKLLNDIRTDVETGTSLSAAFRRHPLYFDSLYCNLVEAGEAAGILEELLDRLATYMEKT
EALKSKIKSALMYPIAVIVVAFVVVAVIMIFVIPSFKEVFTSFGADLPAPTLFVIAMSEFFTEYWWLIFGGIGGGLYFFM
QAWKRNERVQRFMDRLLLKLPIFGVLIEKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTNAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=390959 F9K07_RS25210 WP_159596021.1 5455710..5456927(+) (pilC) [Hydrogenophaga sp. BPS33]
ATGGCAACCGCAGTATCCAAGAGCGTTAAGGACATCGTCTTCGAATGGGAAGGCAAAGACCGAAACGGCAAGCCCGTGCG
TGGGGAAACCCGGGCTGGCGGCGAGAACCAGGTGCAGGCGGCGCTCCGACGGCAAGGCATCGTGCCCAGCAAGATCAAGA
AGCGCCGGATGAGCTCCGGCAAGCGGATCAAACCGAAAGACATCGCGATCTTCACGCGCCAGTTGGCCACGATGATGAAG
GCTGGCGTCCCCTTGCTTCAGGCGTTCGATATCGTGGGTCGCGGCAACCCGAACCCGAATGTGACCAAGCTGCTCAACGA
CATTCGCACCGATGTGGAAACCGGCACGTCGCTGAGCGCTGCATTCCGCAGGCATCCGCTGTACTTCGACAGTCTGTATT
GCAATCTTGTGGAAGCGGGCGAAGCCGCCGGTATTCTCGAAGAGTTGCTGGACCGCCTGGCCACCTACATGGAGAAAACC
GAGGCGCTCAAGTCCAAGATCAAGTCGGCACTGATGTATCCCATCGCGGTGATCGTCGTGGCCTTCGTGGTGGTGGCTGT
GATCATGATCTTCGTGATTCCCTCGTTCAAGGAAGTCTTCACCTCCTTCGGCGCAGACCTTCCCGCGCCAACGCTTTTTG
TGATCGCCATGAGCGAGTTCTTCACCGAGTACTGGTGGCTGATCTTTGGCGGCATTGGCGGCGGCCTCTACTTCTTCATG
CAAGCCTGGAAGCGCAACGAAAGGGTGCAACGGTTCATGGACCGTCTGCTGCTCAAGTTGCCGATCTTCGGCGTACTGAT
CGAAAAATCGGTCATTGCGCGCTGGACGCGCACATTGGCCACCATGTTTGCCGCTGGCGTTCCACTCGTGGAAGCACTCG
ACTCTGTGGGCGGCGCTTCGGGGAATTCGGTCTATGCCATCGCCACGGAAAAGATCCAGCAAGAGGTTTCCACCGGCACC
AGCCTGACCAACGCGATGACCAATGCCAACGTCTTTCCATCGATGGTGTTGCAGATGTGTGCCATTGGTGAGGAATCCGG
ATCGATCGACCACATGCTGGGCAAAGCTGCCGATTTCTACGAAGCCGAGGTCGATGACATGGTCGCGGGCATTTCCAGCC
TGATGGAACCCATCATCATCGTGGTGCTGGGCACGGTCATCGGCGGGATCGTGGTGTCGATGTATCTCCCGATTTTCAAG
CTGGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.478

99.259

0.541
  pilG Neisseria gonorrhoeae MS11

52.393

98.025

0.514
  pilG Neisseria meningitidis 44/76-A

52.141

98.025

0.511
  pilC Acinetobacter baylyi ADP1

51.005

98.272

0.501
  pilC Legionella pneumophila strain ERS1305867

51.005

98.272

0.501
  pilC Acinetobacter baumannii D1279779

48.894

100

0.491
  pilC Vibrio cholerae strain A1552

42.569

98.025

0.417
  pilC Vibrio campbellii strain DS40M4

40.394

100

0.405
  pilC Thermus thermophilus HB27

38.313

100

0.393

Multiple sequence alignment