Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMBM01240355_RS07620 Genome accession   NC_017517
Coordinates   1473760..1474806 (-) Length   348 a.a.
NCBI ID   WP_002223618.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1468760..1479806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS07605 (NMBM01240355_1373) dnaX 1469828..1471948 (+) 2121 WP_014582122.1 DNA polymerase III subunit gamma/tau -
  NMBM01240355_RS07610 (NMBM01240355_1374) - 1472028..1472363 (+) 336 WP_002213018.1 YbaB/EbfC family nucleoid-associated protein -
  NMBM01240355_RS07620 (NMBM01240355_1375) recA 1473760..1474806 (-) 1047 WP_002223618.1 recombinase RecA Machinery gene
  NMBM01240355_RS07625 (NMBM01240355_1376) aroD 1475060..1475824 (+) 765 WP_014582123.1 type I 3-dehydroquinate dehydratase -
  NMBM01240355_RS07630 (NMBM01240355_1377) rep 1475844..1477859 (+) 2016 WP_014582124.1 DNA helicase Rep -
  NMBM01240355_RS07635 (NMBM01240355_1378) dinB 1477927..1478985 (-) 1059 WP_014582125.1 DNA polymerase IV -
  NMBM01240355_RS15335 (NMBM01240355_1379) - 1478966..1479250 (+) 285 WP_153957324.1 hypothetical protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37626.87 Da        Isoelectric Point: 4.8330

>NTDB_id=39054 NMBM01240355_RS07620 WP_002223618.1 1473760..1474806(-) (recA) [Neisseria meningitidis M01-240355]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEID
AKIRALNGVEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=39054 NMBM01240355_RS07620 WP_002223618.1 1473760..1474806(-) (recA) [Neisseria meningitidis M01-240355]
ATGTCAGACGACAAAAGCAAAGCCCTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCACTCGGAGTCG
GCGGTCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCCGAATCCTCCGGCAAAACCACCCTCTGCCTCGAAGCCGTT
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTCGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGCCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGCGAAGAGGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCCCCCCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAGGAAAATCCCGAAATTGCTGATGAAATCGAC
GCAAAAATCCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGGACGCAGGACGAAACCGACGGCGAACGCCCCGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

99.713

100

0.997
  recA Neisseria gonorrhoeae strain FA1090

99.713

100

0.997
  recA Ralstonia pseudosolanacearum GMI1000

74.772

94.54

0.707
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.232

100

0.684
  recA Vibrio cholerae strain A1552

67.232

100

0.684
  recA Glaesserella parasuis strain SC1401

67.806

100

0.684
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Acinetobacter nosocomialis M2

66.097

100

0.667
  recA Acinetobacter baylyi ADP1

66.571

99.713

0.664
  recA Acinetobacter baumannii D1279779

65.805

100

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.396

97.989

0.641
  recA Staphylococcus aureus strain ATCC 12600

65.192

97.414

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635
  recA Helicobacter pylori 26695

67.385

93.391

0.629
  recA Helicobacter pylori strain NCTC11637

67.077

93.391

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.966

0.612
  recA Streptococcus mutans UA159

60.684

100

0.612
  recA Streptococcus pneumoniae R36A

59.544

100

0.601
  recA Streptococcus pneumoniae Rx1

59.544

100

0.601
  recA Streptococcus pneumoniae D39

59.544

100

0.601
  recA Streptococcus pneumoniae R6

59.544

100

0.601
  recA Streptococcus pneumoniae TIGR4

59.544

100

0.601
  recA Streptococcus thermophilus LMD-9

59.827

99.425

0.595
  recA Streptococcus thermophilus LMG 18311

59.827

99.425

0.595
  recA Streptococcus mitis NCTC 12261

59.884

98.851

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

93.966

0.589
  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.115

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572

Multiple sequence alignment