Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FSC12_RS08870 Genome accession   NZ_CP044474
Coordinates   1877241..1878470 (-) Length   409 a.a.
NCBI ID   WP_004810078.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1872241..1883470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08845 (FSC12_08925) - 1873608..1873931 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  FSC12_RS08850 (FSC12_08930) rlmB 1874084..1874833 (+) 750 WP_163169057.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FSC12_RS08855 (FSC12_08935) - 1874840..1875763 (+) 924 WP_163169058.1 DMT family transporter -
  FSC12_RS08860 (FSC12_08940) coaE 1875780..1876379 (-) 600 WP_163164686.1 dephospho-CoA kinase -
  FSC12_RS16525 (FSC12_08945) pilD 1876381..1877241 (-) 861 WP_163169059.1 A24 family peptidase Machinery gene
  FSC12_RS08870 (FSC12_08950) pilC 1877241..1878470 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  FSC12_RS08875 (FSC12_08955) pilB 1878502..1880211 (-) 1710 WP_048881746.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FSC12_RS08880 (FSC12_08960) tpiA 1880494..1881285 (+) 792 WP_108619241.1 triose-phosphate isomerase -
  FSC12_RS08885 (FSC12_08965) secG 1881299..1881628 (+) 330 WP_163169060.1 preprotein translocase subunit SecG -
  FSC12_RS08915 (FSC12_08995) rimP 1882690..1883214 (+) 525 WP_004896325.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44984.45 Da        Isoelectric Point: 9.9331

>NTDB_id=390210 FSC12_RS08870 WP_004810078.1 1877241..1878470(-) (pilC) [Acinetobacter schindleri strain HZE33-1]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=390210 FSC12_RS08870 WP_004810078.1 1877241..1878470(-) (pilC) [Acinetobacter schindleri strain HZE33-1]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGGGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCAATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGTAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCACCTATCTT
CGGTGATCTGGTTTATAAAGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408

Multiple sequence alignment