Detailed information NTG0390227

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FSC12_RS16525
• Genome accession: NZ_CP044474
• Coordinates: 1876381..1877241 (-)
• Length: 286 a.a.
• NCBI ID: WP_163169059.1
• Uniprot ID: -
• Organism: Acinetobacter schindleri strain HZE33-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1871381..1882241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSC12_RS08840 (FSC12_08920)	recN	1871528..1873189 (-)	1662	WP_108619238.1	DNA repair protein RecN	-
FSC12_RS08845 (FSC12_08925)	-	1873608..1873931 (+)	324	WP_004810087.1	pyrimidine/purine nucleoside phosphorylase	-
FSC12_RS08850 (FSC12_08930)	rlmB	1874084..1874833 (+)	750	WP_163169057.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FSC12_RS08855 (FSC12_08935)	-	1874840..1875763 (+)	924	WP_163169058.1	DMT family transporter	-
FSC12_RS08860 (FSC12_08940)	coaE	1875780..1876379 (-)	600	WP_163164686.1	dephospho-CoA kinase	-
FSC12_RS16525 (FSC12_08945)	pilD	1876381..1877241 (-)	861	WP_163169059.1	A24 family peptidase	Machinery gene
FSC12_RS08870 (FSC12_08950)	pilC	1877241..1878470 (-)	1230	WP_004810078.1	type II secretion system F family protein	Machinery gene
FSC12_RS08875 (FSC12_08955)	pilB	1878502..1880211 (-)	1710	WP_048881746.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FSC12_RS08880 (FSC12_08960)	tpiA	1880494..1881285 (+)	792	WP_108619241.1	triose-phosphate isomerase	-
FSC12_RS08885 (FSC12_08965)	secG	1881299..1881628 (+)	330	WP_163169060.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31996.23 Da
• Isoelectric Point: 8.0564

>NTDB_id=390227 FSC12_RS16525 WP_163169059.1 1876381..1877241(-) (pilD) [Acinetobacter schindleri strain HZE33-1]
MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTP
IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=390227 FSC12_RS16525 WP_163169059.1 1876381..1877241(-) (pilD) [Acinetobacter schindleri strain HZE33-1]
ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG
CAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTTTAC
ACCCTGATCAACCGATCATTGATGAAAGCAAGCTTACATTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACACCA
ATTCGCTGGTATCAAAATATCCCCGTGATCAGCTGGTTAGCCTTGCGTGGTAAATGTGCGAACTGTCAAAATCCAATTAG
TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTTGGTCCTACAATACAAA
TGTTGTTCGGTCTGGTGCTGACTTATATTCTCATTGCACTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC
TATACCCTTCCACTTGCAGCTTTAGGCTTAGGGGTGAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG
TTATATTATTGGCTTTCTGTGTTTATGGGTCGTGTACTACCTGTTCAAAATAGTAACTGGTAAAGAAGGCATGGGCTATG
GTGATTTTAAATTGCTGGCTGCTCTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAATTGTATTATTGTCATCACTC
GTCGGTGCAATCATTGGCATTATCCTGCTAAAAGTGCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCCAT
TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	81.404	99.65	0.811
pilD	Acinetobacter baumannii D1279779	81.053	99.65	0.808
pilD	Vibrio campbellii strain DS40M4	52.482	98.601	0.517
pilD	Vibrio cholerae strain A1552	54.887	93.007	0.51
pilD	Neisseria gonorrhoeae MS11	47.253	95.455	0.451