Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   FSC12_RS08875 Genome accession   NZ_CP044474
Coordinates   1878502..1880211 (-) Length   569 a.a.
NCBI ID   WP_048881746.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873502..1885211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08845 (FSC12_08925) - 1873608..1873931 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  FSC12_RS08850 (FSC12_08930) rlmB 1874084..1874833 (+) 750 WP_163169057.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FSC12_RS08855 (FSC12_08935) - 1874840..1875763 (+) 924 WP_163169058.1 DMT family transporter -
  FSC12_RS08860 (FSC12_08940) coaE 1875780..1876379 (-) 600 WP_163164686.1 dephospho-CoA kinase -
  FSC12_RS16525 (FSC12_08945) pilD 1876381..1877241 (-) 861 WP_163169059.1 A24 family peptidase Machinery gene
  FSC12_RS08870 (FSC12_08950) pilC 1877241..1878470 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  FSC12_RS08875 (FSC12_08955) pilB 1878502..1880211 (-) 1710 WP_048881746.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FSC12_RS08880 (FSC12_08960) tpiA 1880494..1881285 (+) 792 WP_108619241.1 triose-phosphate isomerase -
  FSC12_RS08885 (FSC12_08965) secG 1881299..1881628 (+) 330 WP_163169060.1 preprotein translocase subunit SecG -
  FSC12_RS08915 (FSC12_08995) rimP 1882690..1883214 (+) 525 WP_004896325.1 ribosome maturation factor RimP -
  FSC12_RS08920 (FSC12_09000) nusA 1883250..1884734 (+) 1485 WP_004810069.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63550.73 Da        Isoelectric Point: 4.8758

>NTDB_id=390211 FSC12_RS08875 WP_048881746.1 1878502..1880211(-) (pilB) [Acinetobacter schindleri strain HZE33-1]
MTAIQGSPRFTGFIRRLVDEGVISAEDMQGALSSAKKDKIDIVPYLIEHHRLSPTKIAETISLEFGEPLFDISAYDPALI
VREDFDEKIITKHRVLPIFKNSNILFIATSNPTNIEAIDAVRFATKLNIETIIVEHNKLEKLIEQNFTEESTFDFDDDFD
LDVDIDNSDPNKDDEDDNKGDEAPIVKYINKLLIDAIRMGASDLHFEPYEKMYRVRYRVDGVLRQIATPPLQLATRLASR
LKVMSQMDISEKRVPQDGRIKLKLSKNKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEPDQKALFMEALDKPQ
GMLLITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLQGINQVNVNNKVGLTFSAALKSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCPHCKKPADIPRQSLLEMGFS
DDDLQNPEFNIFEPVGCNECREGYKGRVGIYEVMKVTPEISRIIMEDGNAIEIAEASARAGFNNLRRSGLLKVMQGVTSL
QEVNRVTSE

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=390211 FSC12_RS08875 WP_048881746.1 1878502..1880211(-) (pilB) [Acinetobacter schindleri strain HZE33-1]
ATGACAGCAATTCAGGGATCTCCAAGATTTACGGGGTTTATTCGTCGACTTGTCGATGAAGGGGTTATATCTGCAGAAGA
TATGCAGGGTGCTTTGAGCAGTGCCAAAAAAGATAAAATTGATATTGTTCCCTATCTGATTGAACATCACCGCCTCTCGC
CAACCAAAATCGCAGAAACGATTTCTCTTGAATTCGGTGAACCGCTATTTGACATCAGTGCTTATGATCCTGCCCTGATC
GTACGCGAAGATTTTGATGAAAAGATTATTACCAAACACCGCGTACTGCCGATCTTTAAAAATAGCAATATTCTGTTTAT
CGCGACCAGTAACCCGACCAATATCGAAGCAATTGATGCTGTCCGTTTTGCGACCAAACTCAATATTGAAACCATCATTG
TTGAACATAATAAACTCGAAAAACTGATCGAGCAGAATTTTACTGAAGAAAGCACCTTTGACTTTGATGATGATTTTGAT
CTAGATGTTGATATCGATAACTCTGACCCGAATAAAGATGATGAGGATGACAATAAAGGTGATGAAGCACCCATTGTTAA
ATATATTAATAAGTTACTGATTGATGCAATCCGTATGGGTGCATCTGATTTACACTTTGAACCTTATGAAAAAATGTACC
GTGTGCGTTACCGTGTCGACGGGGTCTTGCGTCAAATCGCCACGCCACCTTTACAGCTTGCAACACGTCTGGCTTCACGT
CTTAAAGTTATGTCACAAATGGATATTTCCGAGAAGCGTGTGCCTCAAGATGGCCGGATCAAGTTAAAACTCTCTAAAAA
TAAGGCTATCGATTTCCGTGTCAACTCACTCCCAACCCTGTTTGGGGAAAAACTGGTACTGCGTATTCTGGATCCATCGA
GTGCCATGCTGGGAATTGATGCTTTGGGGTATGAGCCTGATCAAAAAGCCTTATTTATGGAGGCACTAGATAAGCCTCAA
GGTATGCTCTTGATCACCGGTCCGACAGGCTCTGGTAAAACTGTATCTCTCTATACCGGTTTAAATATCCTAAATCGTGA
AGACACGAATATTTCAACTGCTGAAGATCCAGTCGAAATTAACCTGCAAGGGATCAACCAGGTTAACGTCAATAATAAAG
TCGGCCTAACCTTCTCTGCTGCATTGAAATCATTCCTGCGCCAGGATCCTGATATTGTCATGGTCGGTGAGATCCGTGAC
CTGGAAACTGCAGAGATTGCGATCAAGGCAGCACAAACAGGTCATATGGTGATGTCAACACTACATACCAACAGCGCACC
AGAAACCTTGACCCGTTTACGGAATATGGGTGTGCCATCATTTAATATTGCCACCTCGGTGAATTTGGTGATCGCTCAGC
GTTTGGCGCGTCGCCTTTGTCCACATTGCAAAAAACCGGCAGATATTCCACGTCAGAGCCTGCTTGAAATGGGCTTTAGC
GATGATGATTTACAGAATCCGGAATTTAATATTTTTGAACCTGTCGGATGTAACGAATGTCGCGAAGGCTACAAAGGTCG
AGTCGGTATTTATGAAGTCATGAAAGTGACACCAGAGATTTCACGTATTATTATGGAAGATGGCAATGCAATTGAGATTG
CCGAAGCTTCCGCACGCGCAGGTTTTAACAATTTACGCCGATCAGGGTTATTAAAGGTAATGCAGGGGGTGACTTCTCTT
CAGGAAGTCAATCGTGTTACCAGCGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(191-458)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

79.649

100

0.798
  pilB Acinetobacter baylyi ADP1

76.667

100

0.768
  pilB Legionella pneumophila strain ERS1305867

52.037

94.903

0.494
  pilF Neisseria gonorrhoeae MS11

49.02

98.594

0.483
  pilB Vibrio parahaemolyticus RIMD 2210633

49.372

97.891

0.483
  pilB Vibrio cholerae strain A1552

48.501

99.649

0.483
  pilB Vibrio campbellii strain DS40M4

48.115

97.891

0.471
  pilF Thermus thermophilus HB27

37.173

100

0.374
  pilB/pilB1 Synechocystis sp. PCC 6803

34.804

100

0.374

Multiple sequence alignment