Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FSC10_RS01495 Genome accession   NZ_CP044463
Coordinates   304963..306195 (-) Length   410 a.a.
NCBI ID   WP_163170778.1    Uniprot ID   A0AAE7BVN5
Organism   Acinetobacter schindleri strain HZE23-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299963..311195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01470 (FSC10_01495) - 301311..301634 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  FSC10_RS01475 (FSC10_01500) rlmB 301787..302536 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FSC10_RS01480 (FSC10_01505) - 302543..303466 (+) 924 WP_163170776.1 DMT family transporter -
  FSC10_RS01485 (FSC10_01510) coaE 303481..304080 (-) 600 WP_163164686.1 dephospho-CoA kinase -
  FSC10_RS16630 (FSC10_01515) pilD 304082..304945 (-) 864 WP_163170777.1 prepilin peptidase Machinery gene
  FSC10_RS01495 (FSC10_01520) pilC 304963..306195 (-) 1233 WP_163170778.1 type II secretion system F family protein Machinery gene
  FSC10_RS01500 (FSC10_01525) pilB 306227..307936 (-) 1710 WP_163170779.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FSC10_RS01505 (FSC10_01530) tpiA 308219..309010 (+) 792 WP_163170780.1 triose-phosphate isomerase -
  FSC10_RS01510 (FSC10_01535) secG 309024..309353 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -
  FSC10_RS01540 (FSC10_01565) rimP 310415..310939 (+) 525 WP_163164694.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45161.55 Da        Isoelectric Point: 9.8808

>NTDB_id=390155 FSC10_RS01495 WP_163170778.1 304963..306195(-) (pilC) [Acinetobacter schindleri strain HZE23-1]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENSSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPITVLVVAAIVTIILMVKVVPVFQELFQGFGADLPAFTQMVVNMSNWFQQYWFLLIIFIGIAI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=390155 FSC10_RS01495 WP_163170778.1 304963..306195(-) (pilC) [Acinetobacter schindleri strain HZE23-1]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTTACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTGGCCTTGGCCAAGGTCACGTTGCGTAAGCAAGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTCGCT
ACCATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTTGAGAACTCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGCGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTAGAATCCGGTGAACAATCTGGTGCTTTAGAGACTATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCAATGAAGTATCCAATTACTGTCCTTGTAGTTGCAGCCAT
CGTTACGATTATTTTGATGGTCAAAGTTGTTCCTGTTTTCCAGGAGCTTTTCCAAGGCTTTGGCGCTGACCTTCCTGCTT
TTACTCAGATGGTAGTCAACATGTCGAATTGGTTCCAGCAATACTGGTTTCTATTAATTATCTTTATTGGTATTGCAATT
ACAGCATTTTTAGAAGCTAAAAAGCGTAGTAAAAAATTCCGTGACTTTTTAGACAAGGCTGCACTAAAAGCACCTATCTT
CGGTGATCTGGTGTATAAAGCGATTATTGCCCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACGGCGGGCGCGACCAATAATGTAGTTTATGAAGATGCTGTCATGAAAATTCGTGAAGATGTT
GCTACTGGTCAACAACTGCAGTTTGCTATGCGTGTCACCAATAAATTTCCTTCTATGGCTGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTTGATGCCATGCTGGATAAAGTCGCGACCCATTATGAAAATGAAGTCGACAATGCTGTTGATG
GCTTGACCTCCATGATGGAGCCTTTAATTATGGCTATTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCGATGTATCTG
CCAATCTTCCAGATGGGTTCTGTGGTTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.206

99.268

0.876
  pilC Acinetobacter baylyi ADP1

82.064

99.268

0.815
  pilC Pseudomonas stutzeri DSM 10701

61.558

97.073

0.598
  pilC Legionella pneumophila strain ERS1305867

54.02

97.073

0.524
  pilG Neisseria gonorrhoeae MS11

47.739

97.073

0.463
  pilG Neisseria meningitidis 44/76-A

47.739

97.073

0.463
  pilC Vibrio cholerae strain A1552

43.276

99.756

0.432
  pilC Vibrio campbellii strain DS40M4

41.809

99.756

0.417

Multiple sequence alignment