Detailed information NTG0390186

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FSC10_RS16630
• Genome accession: NZ_CP044463
• Coordinates: 304082..304945 (-)
• Length: 287 a.a.
• NCBI ID: WP_163170777.1
• Uniprot ID: A0AAE7BVL1
• Organism: Acinetobacter schindleri strain HZE23-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 299082..309945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSC10_RS01465 (FSC10_01490)	recN	299231..300892 (-)	1662	WP_163170775.1	DNA repair protein RecN	-
FSC10_RS01470 (FSC10_01495)	-	301311..301634 (+)	324	WP_004810087.1	pyrimidine/purine nucleoside phosphorylase	-
FSC10_RS01475 (FSC10_01500)	rlmB	301787..302536 (+)	750	WP_004810085.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FSC10_RS01480 (FSC10_01505)	-	302543..303466 (+)	924	WP_163170776.1	DMT family transporter	-
FSC10_RS01485 (FSC10_01510)	coaE	303481..304080 (-)	600	WP_163164686.1	dephospho-CoA kinase	-
FSC10_RS16630 (FSC10_01515)	pilD	304082..304945 (-)	864	WP_163170777.1	prepilin peptidase	Machinery gene
FSC10_RS01495 (FSC10_01520)	pilC	304963..306195 (-)	1233	WP_163170778.1	type II secretion system F family protein	Machinery gene
FSC10_RS01500 (FSC10_01525)	pilB	306227..307936 (-)	1710	WP_163170779.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FSC10_RS01505 (FSC10_01530)	tpiA	308219..309010 (+)	792	WP_163170780.1	triose-phosphate isomerase	-
FSC10_RS01510 (FSC10_01535)	secG	309024..309353 (+)	330	WP_004810073.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32081.34 Da
• Isoelectric Point: 8.0564

>NTDB_id=390186 FSC10_RS16630 WP_163170777.1 304082..304945(-) (pilD) [Acinetobacter schindleri strain HZE23-1]
MFNEIISYLIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHT
PIRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPD
RYTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLVVLLSS
LVGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 864 bp

>NTDB_id=390186 FSC10_RS16630 WP_163170777.1 304082..304945(-) (pilD) [Acinetobacter schindleri strain HZE23-1]
TTGTTCAATGAAATTATTAGTTATTTAATCCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTAT
CGGTAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTT
TACACCCTGATCAACCGATCATTGATGAAAGCAAGCTTACATTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACA
CCGATTCGCTGGTATCAAAATATTCCTGTGATCAGCTGGCTGGCTCTTCGCGGCAAATGCGCTAACTGTCAAAATCCAAT
TAGTGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTTGGTCCTACAATAC
AAATGTTGTTCGGTCTGGTGCTGACTTATATTCTGATTGCATTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGAT
CGCTATACCCTTCCGCTTGCAGCTTTAGGCTTAGGGGTAAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTG
GGGTTATATCATCGGCTTCCTGTGTTTATGGGTCGTGTACTACCTGTTTAAAATAGTAACTGGTAAAGAAGGCATGGGTT
ATGGTGATTTTAAATTGCTGGCTGCACTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAGTTGTATTATTGTCATCA
CTCGTCGGTGCAATCATTGGCATTATCCTGCTAAAAGTGCGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGC
CATTGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (139-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.634	98.955	0.798
pilD	Acinetobacter baumannii D1279779	80.282	98.955	0.794
pilD	Vibrio cholerae strain A1552	54.511	92.683	0.505
pilD	Vibrio campbellii strain DS40M4	53.903	93.728	0.505
pilD	Neisseria gonorrhoeae MS11	46.909	95.819	0.449