Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FR932_RS19280 Genome accession   NZ_CP044399
Coordinates   4270791..4272044 (-) Length   417 a.a.
NCBI ID   WP_019442598.1    Uniprot ID   A0A5J6WQW4
Organism   Moritella marina ATCC 15381 strain MP-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4265791..4277044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR932_RS19260 (FR932_19265) mutT 4268471..4268863 (+) 393 WP_019442602.1 8-oxo-dGTP diphosphatase MutT -
  FR932_RS19265 (FR932_19270) yacG 4268910..4269095 (-) 186 WP_019442601.1 DNA gyrase inhibitor YacG -
  FR932_RS19270 (FR932_19275) coaE 4269129..4269734 (-) 606 WP_019442600.1 dephospho-CoA kinase -
  FR932_RS19275 (FR932_19280) pilD 4269784..4270674 (-) 891 WP_019442599.1 A24 family peptidase Machinery gene
  FR932_RS19280 (FR932_19285) pilC 4270791..4272044 (-) 1254 WP_019442598.1 type II secretion system F family protein Machinery gene
  FR932_RS19285 (FR932_19290) pilB 4272176..4273879 (-) 1704 WP_019442597.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FR932_RS19290 (FR932_19295) - 4273886..4274332 (-) 447 WP_019442596.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FR932_RS19295 (FR932_19300) nadC 4274756..4275598 (-) 843 WP_019442595.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FR932_RS19300 (FR932_19305) - 4275623..4276129 (-) 507 WP_019442594.1 retropepsin-like aspartic protease -
  FR932_RS19305 (FR932_19310) ampD 4276306..4276872 (+) 567 WP_019442593.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45874.24 Da        Isoelectric Point: 10.0077

>NTDB_id=389759 FR932_RS19280 WP_019442598.1 4270791..4272044(-) (pilC) [Moritella marina ATCC 15381 strain MP-1]
MVAVTKKTHSRPQSAVKKRYPYNWQGVNRKGKKISGEMQAESISNLKVELRRQGINVLKAKRKSTGLFSVATKKIKPMDI
AVISRQISTMLNAGVPLVQSLEIIARSHDNPTMRSLIGEVAAEVATGTTLSDTLRKHPLYFDDLYCDLISAGEQSGSLDS
IYDRIATYKEKAEALKSKIKKAMFYPIMVVAVAVVVTLILLLYVIPQFKDIFASFGAELPPFTLFVLSISDFVSQFWYLV
IGVLFGLPFTYLKANKRSIKVKHITERTILKIPAIGPIMHKGAMARFARTLSTTFAAGIPLVDSLTSAAGASGNIIYKNA
VMDMRNEVIAGLQMHIAMRSTNLFPDMVTQMVMIGEESGSLDDMLAKVAHIYEQQVDDAVDGLTSLIEPMIMVVLGVVIG
GLVIAMYLPIFEMGSIM

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=389759 FR932_RS19280 WP_019442598.1 4270791..4272044(-) (pilC) [Moritella marina ATCC 15381 strain MP-1]
ATGGTCGCTGTAACCAAAAAAACCCATAGTCGCCCCCAATCAGCAGTAAAAAAACGCTATCCATATAACTGGCAAGGCGT
GAACCGTAAAGGCAAAAAAATCAGTGGTGAAATGCAAGCCGAAAGCATCAGTAACCTGAAGGTTGAACTCCGCCGTCAGG
GGATCAATGTTTTAAAAGCCAAGCGTAAATCAACAGGGTTATTCTCGGTTGCGACCAAGAAAATTAAACCGATGGATATT
GCCGTTATCTCAAGACAAATTTCCACCATGCTTAATGCCGGAGTACCTTTAGTACAGAGCCTAGAAATTATAGCCCGCAG
TCATGACAATCCTACCATGCGTTCGTTAATCGGTGAGGTGGCAGCCGAGGTCGCAACAGGTACAACCCTTTCAGATACCC
TACGTAAACATCCACTCTATTTTGATGATTTATATTGTGACTTGATCAGCGCAGGTGAACAGTCCGGTTCATTGGACAGT
ATTTATGATCGTATTGCCACTTATAAAGAAAAAGCCGAAGCACTCAAATCAAAAATTAAAAAAGCCATGTTCTATCCGAT
CATGGTCGTCGCGGTTGCGGTTGTCGTCACCTTGATTTTATTACTGTATGTCATCCCACAATTCAAAGATATCTTCGCCA
GTTTTGGCGCCGAACTGCCGCCTTTTACCTTATTTGTACTGTCGATTTCTGATTTTGTTAGTCAGTTTTGGTATTTAGTC
ATCGGGGTATTATTCGGATTACCTTTTACCTATCTCAAAGCCAATAAGCGTTCGATAAAAGTTAAACACATTACTGAGCG
TACTATCCTCAAGATACCAGCGATCGGACCGATAATGCACAAAGGCGCTATGGCTCGTTTTGCCAGAACCCTATCAACGA
CGTTTGCCGCAGGTATCCCTCTCGTTGACTCACTGACTTCTGCTGCGGGTGCATCGGGTAATATTATCTATAAAAATGCA
GTCATGGATATGCGTAATGAAGTGATCGCCGGATTACAGATGCACATCGCGATGCGTTCAACCAACCTATTTCCAGATAT
GGTGACGCAAATGGTGATGATAGGCGAAGAGTCAGGTTCCCTCGATGATATGTTAGCCAAAGTCGCACACATTTATGAAC
AGCAAGTTGATGATGCCGTTGATGGGCTAACCAGCTTAATCGAACCCATGATCATGGTCGTACTCGGTGTCGTCATTGGC
GGCCTAGTGATTGCGATGTATCTCCCTATCTTTGAAATGGGCAGTATTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6WQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.309

97.122

0.537
  pilC Acinetobacter baumannii D1279779

51.128

95.683

0.489
  pilC Legionella pneumophila strain ERS1305867

51.523

94.484

0.487
  pilC Acinetobacter baylyi ADP1

50.882

95.204

0.484
  pilG Neisseria gonorrhoeae MS11

44.776

96.403

0.432
  pilC Vibrio cholerae strain A1552

45.226

95.444

0.432
  pilG Neisseria meningitidis 44/76-A

44.527

96.403

0.429
  pilC Vibrio campbellii strain DS40M4

43.89

96.163

0.422

Multiple sequence alignment