Detailed information NTG0389758

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FR932_RS19275
• Genome accession: NZ_CP044399
• Coordinates: 4269784..4270674 (-)
• Length: 296 a.a.
• NCBI ID: WP_019442599.1
• Uniprot ID: A0A5J6WNQ9
• Organism: Moritella marina ATCC 15381 strain MP-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4264784..4275674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FR932_RS19255 (FR932_19260)	secA	4265643..4268360 (+)	2718	WP_019442603.1	preprotein translocase subunit SecA	-
FR932_RS19260 (FR932_19265)	mutT	4268471..4268863 (+)	393	WP_019442602.1	8-oxo-dGTP diphosphatase MutT	-
FR932_RS19265 (FR932_19270)	yacG	4268910..4269095 (-)	186	WP_019442601.1	DNA gyrase inhibitor YacG	-
FR932_RS19270 (FR932_19275)	coaE	4269129..4269734 (-)	606	WP_019442600.1	dephospho-CoA kinase	-
FR932_RS19275 (FR932_19280)	pilD	4269784..4270674 (-)	891	WP_019442599.1	A24 family peptidase	Machinery gene
FR932_RS19280 (FR932_19285)	pilC	4270791..4272044 (-)	1254	WP_019442598.1	type II secretion system F family protein	Machinery gene
FR932_RS19285 (FR932_19290)	pilB	4272176..4273879 (-)	1704	WP_019442597.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FR932_RS19290 (FR932_19295)	-	4273886..4274332 (-)	447	WP_019442596.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FR932_RS19295 (FR932_19300)	nadC	4274756..4275598 (-)	843	WP_019442595.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32956.16 Da
• Isoelectric Point: 5.2316

>NTDB_id=389758 FR932_RS19275 WP_019442599.1 4269784..4270674(-) (pilD) [Moritella marina ATCC 15381 strain MP-1]
MQDLALLFQLTPWLLWLTVALLGLLVGSFLNVVIYRLPMMMESEWKEECSVYFSDECKTAEANSKSLAKFNLLLPRSACP
KCEHQITALENIPVISWLILRGKCSSCANPISARYPSIELLTGLLSLVVALYIPYGIQLAGALILTWTLVALTFIDIDKM
LLPDQITLPLVWLGLFLNVNYAWVTPSDAIIGAIVGYLSLWSVYWGFKLLTGKEGMGYGDFKLLAAFGAWFGWQSILAIV
LLSSFAGAIIGISQIALKKHTQGNPIPFGPYLAIAGWLYLIWGDQIVDFYLINFIY

Nucleotide

• Length: 891 bp

>NTDB_id=389758 FR932_RS19275 WP_019442599.1 4269784..4270674(-) (pilD) [Moritella marina ATCC 15381 strain MP-1]
ATGCAAGACTTAGCGCTACTCTTTCAACTCACTCCTTGGCTATTATGGTTAACGGTTGCCCTTCTCGGTCTGCTTGTCGG
TAGTTTCTTGAATGTCGTCATCTACCGTTTGCCAATGATGATGGAAAGTGAGTGGAAAGAAGAATGCAGTGTTTATTTTA
GTGATGAATGTAAAACAGCTGAAGCCAACTCTAAATCATTAGCTAAATTTAACTTATTATTACCCCGCTCAGCTTGCCCT
AAGTGCGAGCATCAAATTACCGCATTAGAAAATATTCCGGTGATCAGTTGGCTAATATTAAGAGGGAAATGCAGCAGTTG
TGCTAATCCCATTTCAGCCCGTTATCCAAGTATTGAGCTATTGACCGGATTGTTATCGCTGGTAGTGGCTTTATACATCC
CCTACGGTATTCAATTAGCGGGTGCATTGATCTTAACCTGGACCTTAGTCGCACTGACTTTTATCGATATAGATAAGATG
TTACTGCCTGATCAAATAACCTTGCCACTGGTATGGCTCGGGTTATTTCTAAACGTTAATTATGCTTGGGTAACACCATC
TGATGCCATTATCGGTGCTATTGTTGGTTATCTGTCATTGTGGTCGGTTTATTGGGGTTTTAAACTACTTACCGGTAAGG
AAGGCATGGGTTACGGTGATTTTAAACTGCTCGCTGCGTTTGGGGCGTGGTTCGGTTGGCAATCAATTCTAGCTATCGTA
CTACTGTCTTCTTTTGCTGGGGCAATCATAGGCATTAGCCAAATAGCATTGAAGAAACATACCCAAGGCAACCCAATCCC
ATTTGGTCCTTACTTAGCGATTGCTGGTTGGTTGTACCTTATCTGGGGCGACCAGATTGTTGATTTCTATTTAATTAATT
TTATTTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A5J6WNQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.172	97.973	0.541
pilD	Vibrio campbellii strain DS40M4	54.167	97.297	0.527
pilD	Acinetobacter baumannii D1279779	53.265	98.311	0.524
pilD	Acinetobacter nosocomialis M2	52.921	98.311	0.52
pilD	Neisseria gonorrhoeae MS11	45.804	96.622	0.443