Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F6X00_RS06740 Genome accession   NZ_CP044206
Coordinates   1421689..1422915 (-) Length   408 a.a.
NCBI ID   WP_182290672.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Vv180806     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416689..1427915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS06700 (F6X00_06825) rpsP 1416885..1417133 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  F6X00_RS06705 (F6X00_06830) rimM 1417149..1417697 (+) 549 WP_011079542.1 ribosome maturation factor RimM -
  F6X00_RS06710 (F6X00_06835) trmD 1417725..1418474 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F6X00_RS06715 (F6X00_06840) rplS 1418516..1418869 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  F6X00_RS06720 (F6X00_06845) yacG 1419086..1419280 (-) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  F6X00_RS06725 (F6X00_06850) zapD 1419343..1420083 (-) 741 WP_011079546.1 cell division protein ZapD -
  F6X00_RS06730 (F6X00_06855) coaE 1420116..1420724 (-) 609 WP_039554617.1 dephospho-CoA kinase -
  F6X00_RS06735 (F6X00_06860) pilD 1420726..1421595 (-) 870 WP_043877313.1 A24 family peptidase Machinery gene
  F6X00_RS06740 (F6X00_06865) pilC 1421689..1422915 (-) 1227 WP_182290672.1 type II secretion system F family protein Machinery gene
  F6X00_RS06745 (F6X00_06870) pilB 1422964..1424652 (-) 1689 WP_182290674.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F6X00_RS06750 (F6X00_06875) - 1424662..1425093 (-) 432 WP_130341685.1 pilin -
  F6X00_RS06755 (F6X00_06880) nadC 1425313..1426200 (-) 888 WP_182290675.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F6X00_RS06760 (F6X00_06885) ampD 1426293..1426865 (+) 573 WP_108695085.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45285.53 Da        Isoelectric Point: 10.3244

>NTDB_id=388757 F6X00_RS06740 WP_182290672.1 1421689..1422915(-) (pilC) [Vibrio vulnificus strain Vv180806]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLSTM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSSGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=388757 F6X00_RS06740 WP_182290672.1 1421689..1422915(-) (pilC) [Vibrio vulnificus strain Vv180806]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCTCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGTAAAATGTTCACCGGATTCGGCGCAGAGCTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGTGCCATTTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGCTCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

98.039

0.765
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

40.842

99.02

0.404
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.268

100

0.395
  pilC Legionella pneumophila strain ERS1305867

39.604

99.02

0.392
  pilC Acinetobacter baylyi ADP1

40.1

97.794

0.392

Multiple sequence alignment