Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F6R98_RS18430 Genome accession   NZ_CP044205
Coordinates   4043071..4044282 (+) Length   403 a.a.
NCBI ID   WP_153250318.1    Uniprot ID   -
Organism   Candidatus Methylospira mobilis strain Shm1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4038071..4049282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6R98_RS18405 (F6R98_18330) - 4038884..4039606 (+) 723 WP_153251138.1 2Fe-2S iron-sulfur cluster-binding protein -
  F6R98_RS18410 (F6R98_18335) - 4039591..4040133 (+) 543 WP_153250314.1 NADP oxidoreductase -
  F6R98_RS18415 (F6R98_18340) moaD 4040144..4040377 (+) 234 WP_153250315.1 molybdopterin converting factor subunit 1 -
  F6R98_RS18420 (F6R98_18345) - 4040379..4040819 (+) 441 WP_153250316.1 molybdenum cofactor biosynthesis protein MoaE -
  F6R98_RS18425 (F6R98_18350) pilB 4040843..4042528 (+) 1686 WP_153250317.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F6R98_RS18430 (F6R98_18355) pilC 4043071..4044282 (+) 1212 WP_153250318.1 type II secretion system F family protein Machinery gene
  F6R98_RS18435 (F6R98_18360) coaE 4044286..4044888 (+) 603 WP_153250319.1 dephospho-CoA kinase -
  F6R98_RS18440 (F6R98_18365) rlmM 4045015..4046112 (-) 1098 WP_153250320.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  F6R98_RS18445 (F6R98_18370) rplS 4046474..4046824 (-) 351 WP_153250321.1 50S ribosomal protein L19 -
  F6R98_RS18450 (F6R98_18375) trmD 4046919..4047668 (-) 750 WP_153251139.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F6R98_RS18455 (F6R98_18380) rimM 4047686..4048186 (-) 501 WP_228124957.1 ribosome maturation factor RimM -
  F6R98_RS18460 (F6R98_18385) rpsP 4048210..4048470 (-) 261 WP_153250323.1 30S ribosomal protein S16 -
  F6R98_RS18470 (F6R98_18395) csrA 4048881..4049075 (-) 195 WP_153251140.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43834.46 Da        Isoelectric Point: 8.7922

>NTDB_id=388727 F6R98_RS18430 WP_153250318.1 4043071..4044282(+) (pilC) [Candidatus Methylospira mobilis strain Shm1]
MADKQISICYLWEGLTADGAQAKGETHARSETIARASLRRQGINVGSLRQKPRTLSPQGRIGSRDIALFSRQLATMMSAG
VPLVQACDILGRGHDNPAIQHLLLTIKSDLETGNTLADSLAKHPLHFDKLFCSLVQAGESAGVLETILQRIADYQERTQS
LKAKVAKALTYPAAVMLVAMTITTILLIFVVPQFEELFKGFGAELPLFTQQVVNLSRFLHERWYLLLAIVLTLALSWIWL
KNHSNSFQILLDKIVLNLPLIGNIQRKACIARIARTLSTLTAAGVPMVGALKSVSGASGNIVFSTAIMLMRNDVATGQSL
QHVMQQSRLFPNMVVQMVAIGEESGALDNMLGKVADFYEEEVGNAVDSLSSLLEPAIMLFLGVVVGGLVIAMYLPIFKLG
TVI

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=388727 F6R98_RS18430 WP_153250318.1 4043071..4044282(+) (pilC) [Candidatus Methylospira mobilis strain Shm1]
ATGGCCGACAAACAAATATCGATTTGCTACCTATGGGAAGGTCTAACCGCGGACGGCGCGCAAGCTAAAGGCGAAACCCA
TGCGCGCAGCGAAACCATTGCGCGCGCAAGCCTGCGCAGGCAGGGTATCAATGTCGGCAGCCTGCGCCAAAAGCCGCGCA
CTTTGTCGCCGCAAGGGCGCATCGGTTCGCGAGATATTGCGCTGTTCAGCCGTCAACTGGCTACCATGATGAGCGCGGGG
GTGCCGCTGGTGCAGGCCTGCGATATACTCGGACGCGGCCACGATAATCCGGCCATACAGCATCTGCTGCTGACCATCAA
ATCCGACCTGGAAACCGGCAATACGTTGGCCGACTCGCTGGCGAAACACCCCCTGCATTTCGACAAGCTGTTCTGCAGCC
TGGTGCAGGCCGGCGAATCGGCCGGCGTGCTGGAAACCATATTGCAGCGCATAGCCGACTACCAGGAGCGCACGCAATCG
CTGAAAGCCAAGGTAGCAAAAGCACTGACCTATCCCGCCGCCGTGATGCTGGTGGCCATGACGATCACCACGATACTGCT
GATTTTCGTGGTTCCACAATTCGAGGAACTGTTCAAAGGCTTCGGCGCGGAGCTTCCCTTATTCACGCAGCAGGTCGTTA
ATCTATCGCGCTTTCTGCATGAGCGCTGGTATCTGCTGCTGGCAATTGTATTGACACTGGCTTTGTCATGGATCTGGCTG
AAAAACCATTCGAACTCTTTTCAAATTTTGCTGGATAAAATCGTATTGAATTTACCGCTCATCGGCAATATTCAACGCAA
AGCCTGTATTGCGCGCATTGCCCGCACCTTGTCCACGCTGACCGCCGCAGGCGTGCCGATGGTCGGTGCGCTGAAATCGG
TATCCGGGGCCAGCGGCAACATAGTCTTTAGCACGGCAATCATGCTGATGCGCAACGATGTCGCCACAGGGCAAAGCCTG
CAGCATGTCATGCAGCAGAGCCGGCTGTTTCCCAATATGGTGGTGCAGATGGTTGCTATAGGCGAAGAGTCCGGCGCGCT
CGACAACATGCTGGGCAAAGTCGCCGATTTTTACGAGGAAGAAGTCGGCAATGCCGTCGACAGTCTGAGCAGCCTGCTCG
AGCCTGCGATTATGCTGTTCCTGGGCGTGGTCGTCGGGGGGCTGGTCATAGCGATGTATTTGCCGATATTCAAACTGGGG
ACGGTCATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(274-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.518

98.759

0.529
  pilC Pseudomonas stutzeri DSM 10701

51.358

100

0.516
  pilC Acinetobacter baumannii D1279779

49.254

99.752

0.491
  pilC Acinetobacter baylyi ADP1

48.01

99.752

0.479
  pilG Neisseria meningitidis 44/76-A

43.687

98.263

0.429
  pilC Vibrio cholerae strain A1552

43.25

99.256

0.429
  pilG Neisseria gonorrhoeae MS11

43.434

98.263

0.427
  pilC Vibrio campbellii strain DS40M4

40.955

98.759

0.404
  pilC Thermus thermophilus HB27

37.093

99.007

0.367

Multiple sequence alignment