Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB65_RS15185 Genome accession   NZ_CP044074
Coordinates   2955623..2956840 (-) Length   405 a.a.
NCBI ID   WP_027600839.1    Uniprot ID   A0A3D9F4L0
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2955623..2973026 2955623..2956840 within 0


Gene organization within MGE regions


Location: 2955623..2973026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS15185 (FOB65_15185) pilC 2955623..2956840 (-) 1218 WP_027600839.1 type II secretion system F family protein Machinery gene
  FOB65_RS15190 (FOB65_15190) pilB 2957051..2958745 (-) 1695 WP_150339511.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB65_RS15195 (FOB65_15195) - 2958958..2959422 (+) 465 WP_150339514.1 pilin -
  FOB65_RS15200 (FOB65_15200) - 2959969..2960967 (-) 999 WP_150339517.1 SDR family oxidoreductase -
  FOB65_RS15210 (FOB65_15210) cyoA 2961740..2962663 (+) 924 WP_007160924.1 ubiquinol oxidase subunit II -
  FOB65_RS15215 (FOB65_15215) cyoB 2962667..2964655 (+) 1989 WP_007160923.1 cytochrome o ubiquinol oxidase subunit I -
  FOB65_RS15220 (FOB65_15220) - 2964660..2965274 (+) 615 WP_027600197.1 cytochrome o ubiquinol oxidase subunit III -
  FOB65_RS15225 (FOB65_15225) cyoD 2965274..2965612 (+) 339 WP_007160921.1 cytochrome o ubiquinol oxidase subunit IV -
  FOB65_RS15230 (FOB65_15230) cyoE 2965624..2966511 (+) 888 WP_223855368.1 heme o synthase -
  FOB65_RS24505 - 2966579..2970496 (-) 3918 WP_223855369.1 pilus assembly protein -
  FOB65_RS15240 (FOB65_15240) - 2970493..2971107 (-) 615 WP_150339519.1 PilX N-terminal domain-containing pilus assembly protein -
  FOB65_RS15245 (FOB65_15245) - 2971104..2971892 (-) 789 WP_150339521.1 PilW family protein -
  FOB65_RS15250 (FOB65_15250) pilV 2971896..2972492 (-) 597 WP_027600847.1 type IV pilus modification protein PilV -
  FOB65_RS15255 (FOB65_15255) - 2972493..2973026 (-) 534 WP_027600848.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44190.10 Da        Isoelectric Point: 9.8100

>NTDB_id=387462 FOB65_RS15185 WP_027600839.1 2955623..2956840(-) (pilC) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=387462 FOB65_RS15185 WP_027600839.1 2955623..2956840(-) (pilC) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAAGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAGAT
GACGGGACTGAATCCTGCGCTGATCAAGGCGCAGTTGCGCAAGCAGGGGATCAATCCAACCCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCCTGTTCACCCGACAGCTGGCGACCATGATGAGC
GCGGGCGTACCTCTGCTCCAGGCCTTCGACATCATCGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTTGCCGCGGGTAATAGCCTGGCCAACTCCTTGCGCAAGCAGCCACAGTATTTCGACGATCTCTATT
GCAACCTGGTGGATGCCGGTGAGCAATCGGGTGCCCTGGAGACCTTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGTTGAAGAAGAAGATCAAGAAGGCCATGACCTATCCTGCGGCGGTAATCGTCGTCGCGGTAATCGTGTCGGCCAT
TCTATTGATCAAGGTAGTGCCTCAATTCCAATCGGTGTTCGAGGGCTTCGGTGCTCAGTTGCCGGCCTTTACCCTTATGG
TCATCGCGATTTCCGAGGTTTTGCAGGAGTGGTGGTTGCTGGTACTGGGCGGGCTCTTTGTGCTGGCTTTCGTCCTTCGC
CACTTCTACAAGAAATCGGAAAAATTCCGCGATGCGGTCGACCGGGGATTGCTCAAGATCCCGTTGATCGGCTCCATTCT
CTACAAGTCGGCCATTGCCCGTTATGCCCGGACCCTGGCCACTACCTTCGCGGCGGGTGTCCCCTTGGTGGATGCTCTCG
ATTCGGTGGCCGGCGCGACCGGCAACGTGGTATTCCGCAACGCCGTGGAGAAGATCAAAGGCGATGTGTCCACCGGTATG
CAGCTCAACTTCTCCATGCGCACTACTGGGGTGTTCTCATCCATGGCCATCCAGATGACGGCCATCGGTGAAGAATCCGG
TTCGCTGGACGAGATGCTGTCCAAAGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTGGGGGTTCTGGTGGGCGGTCTGATCATTGCCATGTATCTGCCCATCTTCCAG
CTCGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D9F4L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.259

100

0.793
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Acinetobacter baumannii D1279779

59.406

99.753

0.593
  pilC Legionella pneumophila strain ERS1305867

54.66

98.025

0.536
  pilG Neisseria meningitidis 44/76-A

45.32

100

0.454
  pilG Neisseria gonorrhoeae MS11

45.074

100

0.452
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.196

100

0.405
  pilC Thermus thermophilus HB27

37.965

99.506

0.378

Multiple sequence alignment