Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | FOB65_RS15185 | Genome accession | NZ_CP044074 |
| Coordinates | 2955623..2956840 (-) | Length | 405 a.a. |
| NCBI ID | WP_027600839.1 | Uniprot ID | A0A3D9F4L0 |
| Organism | Pseudomonas oryzihabitans strain FDAARGOS_657 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2950623..2961840
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB65_RS15165 (FOB65_15165) | - | 2953438..2953935 (+) | 498 | WP_042137113.1 | hypothetical protein | - |
| FOB65_RS15170 (FOB65_15170) | yacG | 2953949..2954146 (-) | 198 | WP_007160931.1 | DNA gyrase inhibitor YacG | - |
| FOB65_RS15175 (FOB65_15175) | coaE | 2954143..2954754 (-) | 612 | WP_150339506.1 | dephospho-CoA kinase | - |
| FOB65_RS15180 (FOB65_15180) | pilD | 2954751..2955623 (-) | 873 | WP_150339509.1 | A24 family peptidase | Machinery gene |
| FOB65_RS15185 (FOB65_15185) | pilC | 2955623..2956840 (-) | 1218 | WP_027600839.1 | type II secretion system F family protein | Machinery gene |
| FOB65_RS15190 (FOB65_15190) | pilB | 2957051..2958745 (-) | 1695 | WP_150339511.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FOB65_RS15195 (FOB65_15195) | - | 2958958..2959422 (+) | 465 | WP_150339514.1 | pilin | - |
| FOB65_RS15200 (FOB65_15200) | - | 2959969..2960967 (-) | 999 | WP_150339517.1 | SDR family oxidoreductase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44190.10 Da Isoelectric Point: 9.8100
>NTDB_id=387462 FOB65_RS15185 WP_027600839.1 2955623..2956840(-) (pilC) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV
Nucleotide
Download Length: 1218 bp
>NTDB_id=387462 FOB65_RS15185 WP_027600839.1 2955623..2956840(-) (pilC) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAAGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAGAT
GACGGGACTGAATCCTGCGCTGATCAAGGCGCAGTTGCGCAAGCAGGGGATCAATCCAACCCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCCTGTTCACCCGACAGCTGGCGACCATGATGAGC
GCGGGCGTACCTCTGCTCCAGGCCTTCGACATCATCGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTTGCCGCGGGTAATAGCCTGGCCAACTCCTTGCGCAAGCAGCCACAGTATTTCGACGATCTCTATT
GCAACCTGGTGGATGCCGGTGAGCAATCGGGTGCCCTGGAGACCTTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGTTGAAGAAGAAGATCAAGAAGGCCATGACCTATCCTGCGGCGGTAATCGTCGTCGCGGTAATCGTGTCGGCCAT
TCTATTGATCAAGGTAGTGCCTCAATTCCAATCGGTGTTCGAGGGCTTCGGTGCTCAGTTGCCGGCCTTTACCCTTATGG
TCATCGCGATTTCCGAGGTTTTGCAGGAGTGGTGGTTGCTGGTACTGGGCGGGCTCTTTGTGCTGGCTTTCGTCCTTCGC
CACTTCTACAAGAAATCGGAAAAATTCCGCGATGCGGTCGACCGGGGATTGCTCAAGATCCCGTTGATCGGCTCCATTCT
CTACAAGTCGGCCATTGCCCGTTATGCCCGGACCCTGGCCACTACCTTCGCGGCGGGTGTCCCCTTGGTGGATGCTCTCG
ATTCGGTGGCCGGCGCGACCGGCAACGTGGTATTCCGCAACGCCGTGGAGAAGATCAAAGGCGATGTGTCCACCGGTATG
CAGCTCAACTTCTCCATGCGCACTACTGGGGTGTTCTCATCCATGGCCATCCAGATGACGGCCATCGGTGAAGAATCCGG
TTCGCTGGACGAGATGCTGTCCAAAGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTGGGGGTTCTGGTGGGCGGTCTGATCATTGCCATGTATCTGCCCATCTTCCAG
CTCGGCTCGGTGGTCTGA
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAAGGGACCGATCGCAAAGGGACCAAGGTGAAGGGCGAGAT
GACGGGACTGAATCCTGCGCTGATCAAGGCGCAGTTGCGCAAGCAGGGGATCAATCCAACCCGGGTGCGCAAGAAGTCGG
TGTCGCTGTTCGGCAAGGGCAAGAAGATCAAGCCCATGGATATCGCCCTGTTCACCCGACAGCTGGCGACCATGATGAGC
GCGGGCGTACCTCTGCTCCAGGCCTTCGACATCATCGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTCGACGA
CATCAAGCAGGATGTTGCCGCGGGTAATAGCCTGGCCAACTCCTTGCGCAAGCAGCCACAGTATTTCGACGATCTCTATT
GCAACCTGGTGGATGCCGGTGAGCAATCGGGTGCCCTGGAGACCTTGCTGGATCGGGTAGCCACCTACAAGGAAAAGACC
GAGGCGTTGAAGAAGAAGATCAAGAAGGCCATGACCTATCCTGCGGCGGTAATCGTCGTCGCGGTAATCGTGTCGGCCAT
TCTATTGATCAAGGTAGTGCCTCAATTCCAATCGGTGTTCGAGGGCTTCGGTGCTCAGTTGCCGGCCTTTACCCTTATGG
TCATCGCGATTTCCGAGGTTTTGCAGGAGTGGTGGTTGCTGGTACTGGGCGGGCTCTTTGTGCTGGCTTTCGTCCTTCGC
CACTTCTACAAGAAATCGGAAAAATTCCGCGATGCGGTCGACCGGGGATTGCTCAAGATCCCGTTGATCGGCTCCATTCT
CTACAAGTCGGCCATTGCCCGTTATGCCCGGACCCTGGCCACTACCTTCGCGGCGGGTGTCCCCTTGGTGGATGCTCTCG
ATTCGGTGGCCGGCGCGACCGGCAACGTGGTATTCCGCAACGCCGTGGAGAAGATCAAAGGCGATGTGTCCACCGGTATG
CAGCTCAACTTCTCCATGCGCACTACTGGGGTGTTCTCATCCATGGCCATCCAGATGACGGCCATCGGTGAAGAATCCGG
TTCGCTGGACGAGATGCTGTCCAAAGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTCCTGGGGGTTCTGGTGGGCGGTCTGATCATTGCCATGTATCTGCCCATCTTCCAG
CTCGGCTCGGTGGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
79.259 |
100 |
0.793 |
| pilC | Acinetobacter baylyi ADP1 |
59.314 |
100 |
0.598 |
| pilC | Acinetobacter baumannii D1279779 |
59.406 |
99.753 |
0.593 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.66 |
98.025 |
0.536 |
| pilG | Neisseria meningitidis 44/76-A |
45.32 |
100 |
0.454 |
| pilG | Neisseria gonorrhoeae MS11 |
45.074 |
100 |
0.452 |
| pilC | Vibrio cholerae strain A1552 |
42.222 |
100 |
0.422 |
| pilC | Vibrio campbellii strain DS40M4 |
40.196 |
100 |
0.405 |
| pilC | Thermus thermophilus HB27 |
37.965 |
99.506 |
0.378 |