Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB71_RS20885 Genome accession   NZ_CP044069
Coordinates   2798438..2799664 (+) Length   408 a.a.
NCBI ID   WP_017421192.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2793438..2804664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS20865 (FOB71_20860) ampD 2794476..2795048 (-) 573 WP_017421196.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FOB71_RS20870 (FOB71_20865) nadC 2795141..2796028 (+) 888 WP_017421195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FOB71_RS20875 (FOB71_20870) - 2796251..2796700 (+) 450 WP_176309687.1 pilin -
  FOB71_RS20880 (FOB71_20875) pilB 2796705..2798390 (+) 1686 WP_017421193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB71_RS20885 (FOB71_20880) pilC 2798438..2799664 (+) 1227 WP_017421192.1 type II secretion system F family protein Machinery gene
  FOB71_RS20890 (FOB71_20885) pilD 2799758..2800627 (+) 870 WP_026060802.1 A24 family peptidase Machinery gene
  FOB71_RS20895 (FOB71_20890) coaE 2800629..2801237 (+) 609 WP_017421190.1 dephospho-CoA kinase -
  FOB71_RS20900 (FOB71_20895) zapD 2801270..2802010 (+) 741 WP_017421189.1 cell division protein ZapD -
  FOB71_RS20905 (FOB71_20900) yacG 2802073..2802267 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  FOB71_RS20910 (FOB71_20905) rplS 2802579..2802932 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  FOB71_RS20915 (FOB71_20910) trmD 2802974..2803723 (-) 750 WP_017421188.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FOB71_RS20920 (FOB71_20915) rimM 2803751..2804299 (-) 549 WP_017421187.1 ribosome maturation factor RimM -
  FOB71_RS20925 (FOB71_20920) rpsP 2804315..2804563 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45200.53 Da        Isoelectric Point: 10.3569

>NTDB_id=387387 FOB71_RS20885 WP_017421192.1 2798438..2799664(+) (pilC) [Vibrio vulnificus strain FDAARGOS_663]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVVKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=387387 FOB71_RS20885 WP_017421192.1 2798438..2799664(+) (pilC) [Vibrio vulnificus strain FDAARGOS_663]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTCGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGGTCAAGGCATTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTACCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGTAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGAGG
AGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGTTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTGGTCGCCGCCATGTACCTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

98.039

0.765
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.299

98.529

0.397

Multiple sequence alignment