Detailed information NTG0387388

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB71_RS20890
• Genome accession: NZ_CP044069
• Coordinates: 2799758..2800627 (+)
• Length: 289 a.a.
• NCBI ID: WP_026060802.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FDAARGOS_663
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2794758..2805627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB71_RS20870 (FOB71_20865)	nadC	2795141..2796028 (+)	888	WP_017421195.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FOB71_RS20875 (FOB71_20870)	-	2796251..2796700 (+)	450	WP_176309687.1	pilin	-
FOB71_RS20880 (FOB71_20875)	pilB	2796705..2798390 (+)	1686	WP_017421193.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FOB71_RS20885 (FOB71_20880)	pilC	2798438..2799664 (+)	1227	WP_017421192.1	type II secretion system F family protein	Machinery gene
FOB71_RS20890 (FOB71_20885)	pilD	2799758..2800627 (+)	870	WP_026060802.1	A24 family peptidase	Machinery gene
FOB71_RS20895 (FOB71_20890)	coaE	2800629..2801237 (+)	609	WP_017421190.1	dephospho-CoA kinase	-
FOB71_RS20900 (FOB71_20895)	zapD	2801270..2802010 (+)	741	WP_017421189.1	cell division protein ZapD	-
FOB71_RS20905 (FOB71_20900)	yacG	2802073..2802267 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
FOB71_RS20910 (FOB71_20905)	rplS	2802579..2802932 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
FOB71_RS20915 (FOB71_20910)	trmD	2802974..2803723 (-)	750	WP_017421188.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FOB71_RS20920 (FOB71_20915)	rimM	2803751..2804299 (-)	549	WP_017421187.1	ribosome maturation factor RimM	-
FOB71_RS20925 (FOB71_20920)	rpsP	2804315..2804563 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32259.36 Da
• Isoelectric Point: 6.8198

>NTDB_id=387388 FOB71_RS20890 WP_026060802.1 2799758..2800627(+) (pilD) [Vibrio vulnificus strain FDAARGOS_663]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLIAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSIVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=387388 FOB71_RS20890 WP_026060802.1 2799758..2800627(+) (pilD) [Vibrio vulnificus strain FDAARGOS_663]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAATCGCTTGGAAGTTCGGTTATGCACCAATTACCGTAGCACTGA
TTGGGTTTACTTTGGTGTTAATCGCCGCTACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGATTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCCTTTCCATTTGGGCCTTATTTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.509	100	0.775
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	53.986	95.502	0.516
pilD	Acinetobacter baumannii D1279779	53.986	95.502	0.516
pilD	Neisseria gonorrhoeae MS11	47.636	95.156	0.453