Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB75_RS15920 Genome accession   NZ_CP044062
Coordinates   3121673..3122896 (-) Length   407 a.a.
NCBI ID   WP_005462561.1    Uniprot ID   A0A9P2QS90
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3116673..3127896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS15880 (FOB75_15880) rpsP 3116807..3117055 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FOB75_RS15885 (FOB75_15885) rimM 3117084..3117632 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  FOB75_RS15890 (FOB75_15890) trmD 3117660..3118403 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FOB75_RS15895 (FOB75_15895) rplS 3118445..3118798 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  FOB75_RS15900 (FOB75_15900) yacG 3119093..3119287 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FOB75_RS15905 (FOB75_15905) zapD 3119356..3120096 (-) 741 WP_023624252.1 cell division protein ZapD -
  FOB75_RS15910 (FOB75_15910) coaE 3120124..3120738 (-) 615 WP_021450019.1 dephospho-CoA kinase -
  FOB75_RS15915 (FOB75_15915) pilD 3120739..3121608 (-) 870 WP_150334548.1 A24 family peptidase Machinery gene
  FOB75_RS15920 (FOB75_15920) pilC 3121673..3122896 (-) 1224 WP_005462561.1 type II secretion system F family protein Machinery gene
  FOB75_RS15925 (FOB75_15925) pilB 3122921..3124606 (-) 1686 WP_150334549.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB75_RS15930 (FOB75_15930) - 3124611..3125036 (-) 426 WP_025533029.1 type IV pilin protein -
  FOB75_RS15935 (FOB75_15935) nadC 3125299..3126186 (-) 888 WP_025523107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FOB75_RS15940 (FOB75_15940) ampD 3126279..3126830 (+) 552 WP_025536234.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45234.41 Da        Isoelectric Point: 10.4368

>NTDB_id=387314 FOB75_RS15920 WP_005462561.1 3121673..3122896(-) (pilC) [Vibrio parahaemolyticus strain FDAARGOS_667]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=387314 FOB75_RS15920 WP_005462561.1 3121673..3122896(-) (pilC) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACTTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCTGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAACTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGTTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTCAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACATCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment