Detailed information NTG0387313

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB75_RS15915
• Genome accession: NZ_CP044062
• Coordinates: 3120739..3121608 (-)
• Length: 289 a.a.
• NCBI ID: WP_150334548.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FDAARGOS_667
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3115739..3126608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB75_RS15880 (FOB75_15880)	rpsP	3116807..3117055 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FOB75_RS15885 (FOB75_15885)	rimM	3117084..3117632 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FOB75_RS15890 (FOB75_15890)	trmD	3117660..3118403 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FOB75_RS15895 (FOB75_15895)	rplS	3118445..3118798 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FOB75_RS15900 (FOB75_15900)	yacG	3119093..3119287 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FOB75_RS15905 (FOB75_15905)	zapD	3119356..3120096 (-)	741	WP_023624252.1	cell division protein ZapD	-
FOB75_RS15910 (FOB75_15910)	coaE	3120124..3120738 (-)	615	WP_021450019.1	dephospho-CoA kinase	-
FOB75_RS15915 (FOB75_15915)	pilD	3120739..3121608 (-)	870	WP_150334548.1	A24 family peptidase	Machinery gene
FOB75_RS15920 (FOB75_15920)	pilC	3121673..3122896 (-)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
FOB75_RS15925 (FOB75_15925)	pilB	3122921..3124606 (-)	1686	WP_150334549.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FOB75_RS15930 (FOB75_15930)	-	3124611..3125036 (-)	426	WP_025533029.1	type IV pilin protein	-
FOB75_RS15935 (FOB75_15935)	nadC	3125299..3126186 (-)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32357.40 Da
• Isoelectric Point: 6.8205

>NTDB_id=387313 FOB75_RS15915 WP_150334548.1 3120739..3121608(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_667]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNVPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=387313 FOB75_RS15915 WP_150334548.1 3120739..3121608(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATGTTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446