Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FJD32_RS20630 Genome accession   NZ_CP043902
Coordinates   4616884..4618155 (+) Length   423 a.a.
NCBI ID   WP_140907785.1    Uniprot ID   -
Organism   Shewanella sp. LC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4611884..4623155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJD32_RS25315 (FJD32_020920) - 4612863..4613276 (+) 414 WP_088586230.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FJD32_RS20620 - 4613324..4614250 (-) 927 WP_181159898.1 O-antigen ligase family protein -
  FJD32_RS20625 (FJD32_020930) pilB 4615068..4616777 (+) 1710 WP_140907784.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FJD32_RS20630 (FJD32_020935) pilC 4616884..4618155 (+) 1272 WP_140907785.1 type II secretion system F family protein Machinery gene
  FJD32_RS20635 (FJD32_020940) pilD 4618309..4619235 (+) 927 WP_140907786.1 A24 family peptidase Machinery gene
  FJD32_RS20640 (FJD32_020945) coaE 4619373..4619990 (+) 618 WP_047534370.1 dephospho-CoA kinase -
  FJD32_RS20645 (FJD32_020950) zapD 4619983..4620717 (+) 735 WP_037413632.1 cell division protein ZapD -
  FJD32_RS20650 (FJD32_020955) yacG 4620820..4621029 (+) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  FJD32_RS20655 (FJD32_020960) mutT 4621116..4621511 (+) 396 WP_140907787.1 8-oxo-dGTP diphosphatase MutT -
  FJD32_RS20660 (FJD32_020965) - 4621655..4622191 (+) 537 WP_037426365.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46077.41 Da        Isoelectric Point: 10.2770

>NTDB_id=386417 FJD32_RS20630 WP_140907785.1 4616884..4618155(+) (pilC) [Shewanella sp. LC6]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=386417 FJD32_RS20630 WP_140907785.1 4616884..4618155(+) (pilC) [Shewanella sp. LC6]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAACCGCGACGGCCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCTGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGAGATGCCAAAATTACC
CCTATGGATATTGCTATGGTGACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGTTAGCGACAATTCTATCGGAGATCCAGTCAGGTATTCCGT
TATCTGATGCTTTGCGTCCCCACCGACGTTATTTTGATGATCTTTATGTCGATTTAGTGGCGGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCCAAGATTAAAAAAGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACGGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGGGCCGAGTTACCTGCATTTACCCAATTGGTTTTGCATATCTCCCGCGGCCTACAATCCTCT
TGGTATATTTTTTTGGGTGCCATAGTGGCTGGCGTATTTTTATTTGTGAGGGCTCATAGGAACTCGCAAATCGTGAGAGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCGCGTTTTGCCCGTA
CCTTAGCCACCACCTTTGCCGCTGGTGTCCCCTTAATCGACGGCTTAGAATCCGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAAGCCATCTTAAAAATCCGCCAGGAAGTAATGGCCGGGATGCAAATGAACGTGGCAATGCGGACCACAGGGCT
GTTCCCCGATATGTTGATCCAAATGGTGATGATTGGTGAAGAATCAGGCTCGCTAGATAATATGCTCAATAAGGTTTCAA
CCATCTATGAAATGCAAGTAGACGACGCTGTCGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGC
ACTGTTGTTGGTGGTCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAAGTGGTTAGTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.492

94.09

0.456
  pilC Vibrio campbellii strain DS40M4

44.853

96.454

0.433
  pilG Neisseria meningitidis 44/76-A

41.687

95.272

0.397
  pilG Neisseria gonorrhoeae MS11

41.687

95.272

0.397

Multiple sequence alignment