Detailed information NTG0386418

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJD32_RS20635
• Genome accession: NZ_CP043902
• Coordinates: 4618309..4619235 (+)
• Length: 308 a.a.
• NCBI ID: WP_140907786.1
• Uniprot ID: A0A501X5Q7
• Organism: Shewanella sp. LC6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4613309..4624235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJD32_RS20620	-	4613324..4614250 (-)	927	WP_181159898.1	O-antigen ligase family protein	-
FJD32_RS20625 (FJD32_020930)	pilB	4615068..4616777 (+)	1710	WP_140907784.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FJD32_RS20630 (FJD32_020935)	pilC	4616884..4618155 (+)	1272	WP_140907785.1	type II secretion system F family protein	Machinery gene
FJD32_RS20635 (FJD32_020940)	pilD	4618309..4619235 (+)	927	WP_140907786.1	A24 family peptidase	Machinery gene
FJD32_RS20640 (FJD32_020945)	coaE	4619373..4619990 (+)	618	WP_047534370.1	dephospho-CoA kinase	-
FJD32_RS20645 (FJD32_020950)	zapD	4619983..4620717 (+)	735	WP_037413632.1	cell division protein ZapD	-
FJD32_RS20650 (FJD32_020955)	yacG	4620820..4621029 (+)	210	WP_037413634.1	DNA gyrase inhibitor YacG	-
FJD32_RS20655 (FJD32_020960)	mutT	4621116..4621511 (+)	396	WP_140907787.1	8-oxo-dGTP diphosphatase MutT	-
FJD32_RS20660 (FJD32_020965)	-	4621655..4622191 (+)	537	WP_037426365.1	thioredoxin family protein	-
FJD32_RS20665 (FJD32_020970)	-	4622266..4623192 (-)	927	WP_140907788.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34440.94 Da
• Isoelectric Point: 7.3983

>NTDB_id=386418 FJD32_RS20635 WP_140907786.1 4618309..4619235(+) (pilD) [Shewanella sp. LC6]
MTEFFTLLGHTFDQAPWLFICLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADIVKQVGIEKLNKPIDHY
PPKYNLVVPGSACPKCKTSIQPWHNLPILGWLMLRGKCAACHAPISSRYPIIELITGLLVATLAWHFGPSGQFVFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=386418 FJD32_RS20635 WP_140907786.1 4618309..4619235(+) (pilD) [Shewanella sp. LC6]
ATGACTGAATTTTTCACTTTATTGGGTCACACTTTTGACCAAGCACCATGGCTTTTTATCTGCTTAAGTTTTGTGTTTGC
CGCTACTATTGGTAGTTTTTTAAATGTGGTTATTCATCGTTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGTA
ATCAGTATCTGCAGGAATATCATGCAGATATTGTTAAGCAAGTAGGAATAGAAAAGCTCAATAAACCGATTGATCACTAT
CCTCCCAAATACAATCTTGTGGTACCTGGCTCTGCTTGCCCTAAATGTAAAACCTCCATCCAGCCTTGGCATAATTTACC
CATTTTAGGTTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGTCATGCCCCCATTTCCTCACGCTATCCGATTATTGAGC
TAATAACAGGGTTACTCGTTGCAACATTGGCTTGGCATTTTGGCCCCAGCGGGCAATTTGTGTTTGCTGCAATACTCACT
TTTGTGTTGATTGCGCTCACCGGAATCGATCTGGATGAAATGCTGCTTCCCGACCAGATGACCCTTCCCCTGCTATGGTT
AGGACTACTCATTAACCTCAACCATACCTTTACCAACCCAACCGATGCGATTATTGGTGCCGCTGTAGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGCATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTAGGCATTAC
GCTGATCGTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGTTGGATCGCCC
TAATATGGGGTCAACCTATAGTGGATTGGTATTTAAGTACATTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

3D structure

• AlphaFold DB: A0A501X5Q7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.365	96.104	0.503
pilD	Vibrio campbellii strain DS40M4	49.338	98.052	0.484
pilD	Acinetobacter nosocomialis M2	50	94.156	0.471
pilD	Acinetobacter baumannii D1279779	49.655	94.156	0.468
pilD	Neisseria gonorrhoeae MS11	45.329	93.831	0.425