Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   HG697_RS00790 Genome accession   NZ_CP051623
Coordinates   128992..129318 (+) Length   108 a.a.
NCBI ID   WP_003055259.1    Uniprot ID   A0ABU0A7H0
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123992..134318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG697_RS00775 (HG697_00780) - 126636..127001 (+) 366 WP_003055257.1 DUF1033 family protein -
  HG697_RS00780 (HG697_00785) comGA/cglA 127082..128023 (+) 942 WP_003055265.1 competence type IV pilus ATPase ComGA Machinery gene
  HG697_RS00785 (HG697_00790) comGB 127959..128990 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  HG697_RS00790 (HG697_00795) comGC 128992..129318 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  HG697_RS00795 (HG697_00800) - 129355..130809 (-) 1455 WP_139818685.1 recombinase family protein -
  HG697_RS00800 (HG697_00805) - 130946..131437 (-) 492 WP_170078856.1 hypothetical protein -
  HG697_RS00805 (HG697_00810) - 131448..132218 (-) 771 WP_003055282.1 XRE family transcriptional regulator -
  HG697_RS00810 (HG697_00815) - 132419..132622 (+) 204 WP_003058516.1 helix-turn-helix transcriptional regulator -
  HG697_RS00815 (HG697_00820) - 132911..133060 (+) 150 WP_003058552.1 hypothetical protein -
  HG697_RS00820 (HG697_00825) - 133100..133447 (+) 348 WP_065359272.1 DNA-binding protein -
  HG697_RS00825 (HG697_00830) - 133713..134213 (+) 501 WP_143935354.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.38 Da        Isoelectric Point: 9.6412

>NTDB_id=385772 HG697_RS00790 WP_003055259.1 128992..129318(+) (comGC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=385772 HG697_RS00790 WP_003055259.1 128992..129318(+) (comGC) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A19]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTAATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Streptococcus gordonii str. Challis substr. CH1

60.194

95.37

0.574
  comGC/cglC Streptococcus mitis SK321

53.774

98.148

0.528
  comGC Lactococcus lactis subsp. cremoris KW2

54.369

95.37

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae Rx1

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae D39

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae R6

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

51.402

99.074

0.509
  comGC Streptococcus mutans UA140

53.465

93.519

0.5
  comGC Streptococcus mutans UA159

53.465

93.519

0.5
  comGC Streptococcus suis isolate S10

50.562

82.407

0.417

Multiple sequence alignment