Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0Q04_RS21525 Genome accession   NZ_CP043575
Coordinates   4700778..4701998 (+) Length   406 a.a.
NCBI ID   WP_116927082.1    Uniprot ID   A0A363RH40
Organism   Comamonas koreensis strain T50-37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4695778..4706998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q04_RS21505 rpmA 4697074..4697334 (-) 261 WP_021027814.1 50S ribosomal protein L27 -
  F0Q04_RS21510 rplU 4697350..4697661 (-) 312 WP_027011098.1 50S ribosomal protein L21 -
  F0Q04_RS21515 - 4697929..4698858 (+) 930 WP_182345844.1 polyprenyl synthetase family protein -
  F0Q04_RS21520 pilB 4699024..4700757 (+) 1734 WP_116927081.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0Q04_RS21525 pilC 4700778..4701998 (+) 1221 WP_116927082.1 type II secretion system F family protein Machinery gene
  F0Q04_RS21530 - 4702001..4702876 (+) 876 WP_182343457.1 prepilin peptidase -
  F0Q04_RS21535 coaE 4702878..4703507 (+) 630 WP_182343459.1 dephospho-CoA kinase -
  F0Q04_RS21540 zapD 4703511..4704266 (+) 756 WP_182343461.1 cell division protein ZapD -
  F0Q04_RS21545 - 4704328..4704540 (+) 213 WP_116927086.1 DNA gyrase inhibitor YacG -
  F0Q04_RS21550 - 4704588..4705061 (-) 474 WP_182343463.1 NUDIX domain-containing protein -
  F0Q04_RS21555 - 4705100..4706056 (-) 957 WP_116927088.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44348.01 Da        Isoelectric Point: 9.6546

>NTDB_id=385259 F0Q04_RS21525 WP_116927082.1 4700778..4701998(+) (pilC) [Comamonas koreensis strain T50-37]
MATTVNKKTSNEAVYEWEGKDRNGKIVRGESRAGGENQVIASLRRQGILPSKIKKRRMRSGKRIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGSTNPSVTKLLNDVRSDVESGSSLSTAFRRHPMYFNALYCNLVEAGEAAGILEGLLDRLATYMEK
TEAIKSKIRSALMYPTSVIIVAFVVVAIIMIFVIPAFKEVFTSFGADLPGPTLIVMAISDFFVSYWYLIFFGIGGSIYFF
LQAWKRSEKMQRTMDRWLLKVPIFGPLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFAVATEKIQAQVSTG
TSLTVAMSDAHVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEAVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=385259 F0Q04_RS21525 WP_116927082.1 4700778..4701998(+) (pilC) [Comamonas koreensis strain T50-37]
ATGGCAACCACAGTCAACAAGAAAACATCGAACGAAGCCGTTTATGAGTGGGAAGGCAAGGACCGCAACGGCAAGATCGT
GCGCGGCGAGTCCCGCGCGGGTGGAGAAAACCAGGTCATCGCGTCGCTGCGCCGGCAGGGCATTTTGCCGTCCAAGATCA
AAAAGCGCCGCATGCGCTCGGGCAAGCGCATCAAGCCCAAGGACATCGCCTTGTTCACGCGCCAGCTGGCCACGATGATG
AAGGCCGGTGTGCCTTTGCTGCAGGCTTTTGACATTGTCGGCCGGGGCAGCACCAACCCCAGCGTGACCAAGCTGCTCAA
CGATGTACGCAGCGATGTGGAGTCGGGCTCGTCACTGAGCACCGCCTTTCGCCGCCATCCGATGTACTTCAATGCGCTGT
ATTGCAACCTCGTCGAGGCCGGTGAGGCAGCCGGTATTTTGGAAGGCCTGCTCGACCGCTTGGCCACCTACATGGAAAAG
ACCGAGGCCATCAAGAGCAAGATCCGCTCGGCCCTGATGTACCCGACTTCGGTGATCATCGTCGCCTTTGTCGTGGTGGC
CATCATCATGATCTTTGTGATTCCGGCGTTCAAAGAGGTGTTTACGTCGTTTGGCGCCGACCTGCCCGGCCCCACCTTGA
TCGTGATGGCCATCAGTGATTTCTTTGTCAGTTACTGGTACCTGATCTTTTTTGGCATTGGCGGCAGCATCTACTTCTTT
TTGCAGGCCTGGAAGCGCAGCGAGAAAATGCAGCGCACCATGGACCGCTGGCTGCTGAAGGTGCCGATCTTTGGCCCCTT
GATTGAAAAATCCTGCGTGGCACGCTGGACGCGCACCTTGTCGACCATGTTTGCAGCTGGTGTTCCCCTGGTCGAAGCGC
TGGACTCGGTGGGTGGCGCCTCCGGCAATGCCGTGTTTGCGGTGGCAACCGAGAAGATCCAGGCGCAGGTCTCTACCGGC
ACCAGCCTCACAGTCGCCATGTCGGATGCCCATGTGTTCCCCTCGATGGTGCTGCAGATGTGCGCGATCGGTGAGGAATC
CGGCTCCATCGACCATATGCTGGGCAAAGCGGCAGACTTTTACGAAGCCGAGGTGGACGAGGCCGTTGCCGGCCTGTCCA
GCCTGATGGAGCCCATCATCATCGTGTTTCTGGGCACGATCATCGGCGGCATTGTGGTGTCGATGTACCTGCCGATCTTC
AAGCTGGGCCAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A363RH40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.102

99.261

0.527
  pilG Neisseria gonorrhoeae MS11

53.149

97.783

0.52
  pilG Neisseria meningitidis 44/76-A

52.645

97.783

0.515
  pilC Acinetobacter baylyi ADP1

48.642

99.754

0.485
  pilC Legionella pneumophila strain ERS1305867

48.276

100

0.483
  pilC Acinetobacter baumannii D1279779

46.914

99.754

0.468
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Vibrio campbellii strain DS40M4

40.25

98.522

0.397
  pilC Thermus thermophilus HB27

38.313

100

0.392

Multiple sequence alignment