Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0P95_RS16205 Genome accession   NZ_CP043567
Coordinates   3554482..3555741 (+) Length   419 a.a.
NCBI ID   WP_182335088.1    Uniprot ID   -
Organism   Stenotrophomonas acidaminiphila strain T0-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3547395..3559962 3554482..3555741 within 0


Gene organization within MGE regions


Location: 3547395..3559962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0P95_RS16170 - 3547416..3548195 (+) 780 WP_182335081.1 class I SAM-dependent methyltransferase -
  F0P95_RS16175 - 3548192..3549133 (+) 942 WP_182335082.1 lysylphosphatidylglycerol synthase domain-containing protein -
  F0P95_RS16180 - 3549130..3549978 (+) 849 WP_182335083.1 class I SAM-dependent methyltransferase -
  F0P95_RS16185 - 3549971..3551140 (+) 1170 WP_182335084.1 glycosyltransferase -
  F0P95_RS16190 - 3551234..3553111 (-) 1878 WP_182335085.1 hypothetical protein -
  F0P95_RS17740 - 3553434..3553547 (-) 114 Protein_3131 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  F0P95_RS17385 - 3553950..3554042 (-) 93 Protein_3132 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  F0P95_RS16205 pilC 3554482..3555741 (+) 1260 WP_182335088.1 type II secretion system F family protein Machinery gene
  F0P95_RS16210 pilD 3555749..3556612 (+) 864 WP_182335089.1 A24 family peptidase Machinery gene
  F0P95_RS16215 coaE 3556659..3557282 (+) 624 WP_182335090.1 dephospho-CoA kinase -
  F0P95_RS16220 - 3557318..3558655 (-) 1338 WP_182335091.1 HAMP domain-containing sensor histidine kinase -
  F0P95_RS16225 - 3558648..3559325 (-) 678 WP_054667261.1 response regulator transcription factor -
  F0P95_RS16230 - 3559492..3559962 (-) 471 WP_182335092.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45771.05 Da        Isoelectric Point: 10.0718

>NTDB_id=385184 F0P95_RS16205 WP_182335088.1 3554482..3555741(+) (pilC) [Stenotrophomonas acidaminiphila strain T0-18]
MSATRSAVNKPPVDRSTSLMQPFVWEGTDKRGVKMKGEQEARNANLLRAELRKLGITPSVVKPKPKPLFGAAGKPIKARD
IAFFSRQMATMMKSGVPIVSALEIIGSGHRNPRMAKLVGQVRADLEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIANYQENLESLKGKIKKALFYPAMVIVVALLVSSVLLMWVVPQFEDIFKSFGTELPVFTQMIVAASRFMVSWWWL
ILLASVVGVGGSIFAYKRSPKMQYAMDRLILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKTYED
AVLHMRDDVAVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLIEPIIMVFIGVVV
GSMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=385184 F0P95_RS16205 WP_182335088.1 3554482..3555741(+) (pilC) [Stenotrophomonas acidaminiphila strain T0-18]
ATGTCCGCTACCCGCAGCGCAGTGAACAAACCGCCCGTGGATCGCAGCACCAGCCTGATGCAGCCGTTTGTCTGGGAGGG
GACCGACAAACGCGGCGTGAAGATGAAGGGCGAACAGGAAGCCCGCAATGCCAACCTGCTGCGTGCCGAGCTGCGCAAGC
TGGGCATCACCCCATCGGTGGTCAAACCCAAGCCCAAACCATTGTTCGGCGCCGCCGGCAAGCCCATCAAGGCCCGCGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCTGGCGTGCCCATCGTGAGCGCGCTGGAGATCATCGGCAG
CGGCCATAGAAACCCGCGCATGGCCAAGCTGGTGGGGCAGGTCCGCGCCGATCTGGAGGGCGGCTCCTCGCTGTACGAGG
CCATCAGCAAGCACCCGGTTCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAG
ACCGTGCTGGAAACCATCGCCAACTACCAGGAAAACCTGGAGTCGCTGAAAGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCGATGGTCATCGTCGTCGCACTCCTGGTCAGCTCGGTGCTGCTGATGTGGGTCGTGCCGCAGTTCGAGGACATCTTCA
AGAGCTTCGGCACGGAACTGCCGGTATTCACCCAGATGATCGTGGCGGCATCCCGCTTCATGGTCAGTTGGTGGTGGCTG
ATACTGCTGGCGTCGGTCGTGGGCGTGGGCGGTTCCATCTTCGCCTACAAGCGCAGCCCGAAGATGCAGTACGCGATGGA
TCGGCTGATCCTGAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGCTCGATTGCCCGCTTCGCCCGCACCACGGCAG
TGACCTTCAAGGCCGGCGTGCCGCTGGTTGAAGCCCTGGGGATCGTGGCCGGCGCCACCGGCAACAAGACCTATGAGGAT
GCCGTCCTGCACATGCGCGACGACGTGGCGGTGGGCTATCCGGTGAACATGGCCATGAAACAGGTGAACCTGTTCCCGCA
CATGGTGGTACAGATGACCGCCATCGGCGAGGAAGCCGGCGCGCTGGACACCATGCTGTTCAAGGTGGCCGAGTACTTCG
AACAGGAAGTGAACAATGCCGTGGATGCCTTGAGCAGCCTGATCGAACCGATAATCATGGTGTTCATCGGCGTCGTGGTC
GGCAGCATGGTTGTCGGCATGTACCTACCGATCTTCAAGCTCGCTTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.5

95.465

0.482
  pilC Legionella pneumophila strain ERS1305867

49.268

97.852

0.482
  pilC Acinetobacter baylyi ADP1

48.148

96.659

0.465
  pilC Acinetobacter baumannii D1279779

47.901

96.659

0.463
  pilG Neisseria gonorrhoeae MS11

42.211

94.988

0.401
  pilG Neisseria meningitidis 44/76-A

41.542

95.943

0.399
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39.152

95.704

0.375
  pilC Thermus thermophilus HB27

38.614

96.42

0.372

Multiple sequence alignment