Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG583_RS02515 Genome accession   NZ_CP051533
Coordinates   518144..518404 (+) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori strain LIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513144..523404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS02490 (HG583_02475) - 513643..514635 (+) 993 WP_202143438.1 adenine methyltransferase -
  HG583_RS02495 (HG583_02480) - 514622..515104 (+) 483 Protein_491 R.Pab1 family restriction endonuclease -
  HG583_RS08340 - 515162..515925 (+) 764 Protein_492 hypothetical protein -
  HG583_RS02505 (HG583_02490) - 515936..517851 (+) 1916 Protein_493 hypothetical protein -
  HG583_RS02510 (HG583_02495) - 517841..518143 (+) 303 WP_000649846.1 TrbC/VirB2 family protein -
  HG583_RS02515 (HG583_02500) comB3 518144..518404 (+) 261 WP_000602757.1 hypothetical protein Machinery gene
  HG583_RS02520 (HG583_02505) - 518417..518785 (+) 369 Protein_496 DNA transfer protein -
  HG583_RS02525 (HG583_02510) - 519744..521777 (+) 2034 WP_202142866.1 relaxase/mobilization nuclease domain-containing protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=385184 HG583_RS02515 WP_000602757.1 518144..518404(+) (comB3) [Helicobacter pylori strain LIM-010]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=385184 HG583_RS02515 WP_000602757.1 518144..518404(+) (comB3) [Helicobacter pylori strain LIM-010]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTAGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment