Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG583_RS02550 Genome accession   NZ_CP051533
Coordinates   525874..526140 (+) Length   88 a.a.
NCBI ID   WP_077656508.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520874..531140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG583_RS02530 (HG583_02515) - 522953..523732 (+) 780 WP_078243762.1 hypothetical protein -
  HG583_RS02535 (HG583_02520) - 523751..524044 (+) 294 WP_202143254.1 hypothetical protein -
  HG583_RS02540 (HG583_02525) - 524051..525574 (+) 1524 WP_078243764.1 hypothetical protein -
  HG583_RS02545 (HG583_02530) - 525571..525873 (+) 303 WP_077656509.1 virB2 type IV secretion protein -
  HG583_RS02550 (HG583_02535) comB3 525874..526140 (+) 267 WP_077656508.1 virB3 type IV secretion protein Machinery gene
  HG583_RS02555 (HG583_02540) comB4 526187..528556 (+) 2370 WP_237389114.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG583_RS02560 (HG583_02545) - 528559..530592 (+) 2034 WP_078243766.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10150.97 Da        Isoelectric Point: 4.8782

>NTDB_id=385185 HG583_RS02550 WP_077656508.1 525874..526140(+) (comB3) [Helicobacter pylori strain LIM-010]
MALHIVCVESTNIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHVLFTLK
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=385185 HG583_RS02550 WP_077656508.1 525874..526140(+) (comB3) [Helicobacter pylori strain LIM-010]
ATGGCATTGCATATTGTTTGTGTTGAAAGTACCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGTGCTTTTCACCTTAAAA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40

100

0.409

Multiple sequence alignment