Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BAMF_RS29465 Genome accession   NC_014551
Coordinates   1767893..1769143 (+) Length   416 a.a.
NCBI ID   WP_013352317.1    Uniprot ID   A0A9P1NHF2
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1762893..1774143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS29435 (BAMF_1759) yfmH 1762989..1764275 (+) 1287 WP_013352312.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BAMF_RS29440 (BAMF_1760) ymfI 1764334..1765062 (+) 729 WP_013352313.1 elongation factor P 5-aminopentanone reductase -
  BAMF_RS29445 (BAMF_1761) - 1765138..1765395 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  BAMF_RS29450 (BAMF_1762) - 1765523..1766314 (+) 792 WP_013352314.1 DUF3388 domain-containing protein -
  BAMF_RS29455 (BAMF_1763) - 1766333..1767220 (+) 888 WP_013352315.1 helix-turn-helix domain-containing protein -
  BAMF_RS29460 (BAMF_1764) pgsA 1767294..1767875 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BAMF_RS29465 (BAMF_1765) cinA 1767893..1769143 (+) 1251 WP_013352317.1 competence/damage-inducible protein A Machinery gene
  BAMF_RS29470 (BAMF_1766) recA 1769315..1770358 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  BAMF_RS29475 (BAMF_1767) - 1770525..1771706 (+) 1182 WP_013352319.1 serine hydrolase domain-containing protein -
  BAMF_RS29480 (BAMF_1768) rny 1771997..1773556 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44918.16 Da        Isoelectric Point: 4.9791

>NTDB_id=38479 BAMF_RS29465 WP_013352317.1 1767893..1769143(+) (cinA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEGKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGLVFIGISAEGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=38479 BAMF_RS29465 WP_013352317.1 1767893..1769143(+) (cinA) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAATGTGTTTTATCATACCGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCTGGCGGGCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
TGCGAAAACAAAACGGACAATGTCGCCGAATAACCGCAAACAGGCACTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGGGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGACTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTCACGCTGCGTTTAACGGCAAAACATGCCGACGAAAAAGAAACCGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCTTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAAAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTAAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGTGTTGCGGGCCCTGATCCGCAGGAAGGGCATGCCCCGGGCCTCGTCT
TTATCGGTATTTCCGCTGAAGGCAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAGTCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38

Multiple sequence alignment