Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PPE_RS09545 Genome accession   NC_014483
Coordinates   2082167..2083435 (+) Length   422 a.a.
NCBI ID   WP_043882165.1    Uniprot ID   -
Organism   Paenibacillus polymyxa E681     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077167..2088435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPE_RS09520 (PPE_01954) - 2078023..2078277 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  PPE_RS09525 (PPE_01955) - 2078505..2079278 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  PPE_RS09530 (PPE_01956) - 2079309..2080388 (+) 1080 WP_013309952.1 RodZ domain-containing protein -
  PPE_RS25340 (PPE_05645) - 2080473..2080637 (+) 165 WP_023988236.1 hypothetical protein -
  PPE_RS09535 (PPE_01957) - 2080782..2081273 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  PPE_RS09540 (PPE_01958) pgsA 2081484..2082071 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPE_RS09545 (PPE_01959) cinA 2082167..2083435 (+) 1269 WP_043882165.1 competence/damage-inducible protein A Machinery gene
  PPE_RS09550 (PPE_01960) recA 2083678..2084739 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  PPE_RS09555 (PPE_01961) - 2084935..2085684 (+) 750 WP_013309957.1 RecX family transcriptional regulator -
  PPE_RS09560 (PPE_01962) rny 2086058..2087602 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46381.40 Da        Isoelectric Point: 4.8258

>NTDB_id=38240 PPE_RS09545 WP_043882165.1 2082167..2083435(+) (cinA) [Paenibacillus polymyxa E681]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNINRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=38240 PPE_RS09545 WP_043882165.1 2082167..2083435(+) (cinA) [Paenibacillus polymyxa E681]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAAATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGTCGGCAGGCGCTTTCTATTGAAGGCGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCAAAGGAACTCAAACCCATGTTT
GCAAACCAAGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCGACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGGACTCACTGTGAGTGCCGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTTGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGACTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

49.01

95.735

0.469
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412

Multiple sequence alignment