Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HP2018_RS01940 | Genome accession | NC_017381 |
| Coordinates | 389126..390136 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664468.1 | Uniprot ID | - |
| Organism | Helicobacter pylori 2018 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 384126..395136
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP2018_RS01895 (hp2018_0387) | - | 384207..384581 (-) | 375 | WP_000772146.1 | chemotaxis response regulator CheY | - |
| HP2018_RS01900 (hp2018_0388) | - | 384828..385472 (+) | 645 | WP_000348855.1 | outer membrane protein | - |
| HP2018_RS01910 (hp2018_0389) | - | 385618..386025 (-) | 408 | WP_000906121.1 | hypothetical protein | - |
| HP2018_RS01915 (hp2018_0390) | - | 386028..386270 (-) | 243 | WP_000944363.1 | PP0621 family protein | - |
| HP2018_RS01920 (hp2018_0391) | rsmG | 386264..386800 (-) | 537 | WP_001068785.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HP2018_RS01925 (hp2018_0392) | queA | 386797..387834 (-) | 1038 | WP_000657380.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HP2018_RS01930 (hp2018_0393) | tatC | 387835..388584 (-) | 750 | WP_000461237.1 | twin-arginine translocase subunit TatC | - |
| HP2018_RS01935 (hp2018_0394) | tatB | 388577..389059 (-) | 483 | WP_000467552.1 | Sec-independent protein translocase protein TatB | - |
| HP2018_RS01940 (hp2018_0395) | ruvB | 389126..390136 (-) | 1011 | WP_000664468.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HP2018_RS01945 (hp2018_0396) | panB | 390137..390949 (-) | 813 | WP_000062739.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HP2018_RS01950 (hp2018_0397) | - | 391098..391820 (+) | 723 | WP_014536282.1 | hypothetical protein | - |
| HP2018_RS01955 (hp2018_0398) | - | 391810..392667 (+) | 858 | WP_014533948.1 | outer membrane beta-barrel protein | - |
| HP2018_RS01960 (hp2018_0399) | - | 392679..393620 (+) | 942 | WP_000770223.1 | outer membrane beta-barrel protein | - |
| HP2018_RS01965 (hp2018_0400) | - | 393630..394952 (+) | 1323 | WP_000522722.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37267.29 Da Isoelectric Point: 6.3684
>NTDB_id=38240 HP2018_RS01940 WP_000664468.1 389126..390136(-) (ruvB) [Helicobacter pylori 2018]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=38240 HP2018_RS01940 WP_000664468.1 389126..390136(-) (ruvB) [Helicobacter pylori 2018]
ATGAAAGAACGGATAGTCAATTTAGAAACCTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCCAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAACTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCGGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCTGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACACCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTAGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACGGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCACTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACCTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCCAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAACTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCGGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCTGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACACCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTAGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACGGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCACTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.475 |
90.179 |
0.473 |