Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HP2018_RS02100 Genome accession   NC_017381
Coordinates   418975..420150 (-) Length   391 a.a.
NCBI ID   WP_000059612.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413975..425150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS02065 (hp2018_0421) - 414300..414614 (+) 315 WP_000868001.1 hypothetical protein -
  HP2018_RS02070 (hp2018_0422) - 414592..415359 (+) 768 WP_000602398.1 RNA polymerase sigma factor FliA -
  HP2018_RS02075 (hp2018_0423) fliM 415352..416416 (+) 1065 WP_000763588.1 flagellar motor switch protein FliM -
  HP2018_RS02080 (hp2018_0424) fliY 416420..417277 (+) 858 WP_001150661.1 flagellar motor switch protein FliY -
  HP2018_RS02085 (hp2018_0425) - 417306..417842 (+) 537 WP_000964043.1 YhcH/YjgK/YiaL family protein -
  HP2018_RS02090 (hp2018_0426) - 417839..418342 (+) 504 WP_000780241.1 DUF2147 domain-containing protein -
  HP2018_RS02095 (hp2018_0427) fur 418363..418815 (-) 453 WP_001253265.1 ferric iron uptake transcriptional regulator -
  HP2018_RS02100 (hp2018_0428) rarA 418975..420150 (-) 1176 WP_000059612.1 replication-associated recombination protein A Machinery gene
  HP2018_RS02105 (hp2018_0429) - 420147..420518 (-) 372 WP_000272472.1 heat shock protein transcriptional repressor HspR -
  HP2018_RS02110 (hp2018_0430) - 420528..421394 (-) 867 WP_000045888.1 DnaJ family protein -
  HP2018_RS02115 (hp2018_0431) - 421562..422812 (+) 1251 WP_001199514.1 hypothetical protein -
  HP2018_RS02120 (hp2018_0432) - 423057..423833 (-) 777 WP_000950527.1 5'-3' exonuclease -
  HP2018_RS02125 (hp2018_0433) - 424149..425045 (-) 897 WP_000697524.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43791.33 Da        Isoelectric Point: 8.3022

>NTDB_id=38241 HP2018_RS02100 WP_000059612.1 418975..420150(-) (rarA) [Helicobacter pylori 2018]
MSLTALLNPTSLEDFLGQEHLIGKDTPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILSFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCDK
ALALLKKQIESGAKTYLLNNSTGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNAINLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=38241 HP2018_RS02100 WP_000059612.1 418975..420150(-) (rarA) [Helicobacter pylori 2018]
ATGAGCCTGACTGCGCTTTTAAACCCCACAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACACCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTCATTTAATGCGACGGATTTCAAATTGGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCTTAAACAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGTCTGGCGCTAAAACCTATCTTTTAAACAACAGCACTGGTGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCCTACAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTCACTAGCGCGTTAATCAAATCTTTAAGAGGGAGTGAT
GAAAACGCTTCCATCTATTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCATTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGTATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.107

100

0.402

Multiple sequence alignment