Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HC362_RS22245 Genome accession   NZ_CP050693
Coordinates   5085023..5085682 (+) Length   219 a.a.
NCBI ID   WP_209263156.1    Uniprot ID   A0ABS3WMH4
Organism   Streptomyces sp. 891-h     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5080023..5090682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC362_RS22220 (HC362_22135) - 5081770..5081964 (+) 195 WP_243085759.1 hypothetical protein -
  HC362_RS22235 (HC362_22150) tig 5082552..5083982 (+) 1431 WP_243085760.1 trigger factor -
  HC362_RS22240 (HC362_22155) clpP 5084347..5084952 (+) 606 WP_209238803.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HC362_RS22245 (HC362_22160) clpP 5085023..5085682 (+) 660 WP_209263156.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HC362_RS22250 (HC362_22165) clpX 5085858..5087141 (+) 1284 WP_209263157.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HC362_RS22255 (HC362_22170) - 5087214..5088005 (-) 792 WP_243085761.1 hypothetical protein -
  HC362_RS22260 (HC362_22175) - 5088013..5088930 (-) 918 WP_243085762.1 hypothetical protein -
  HC362_RS22265 (HC362_22180) - 5089137..5090201 (-) 1065 WP_243085763.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24269.52 Da        Isoelectric Point: 4.5019

>NTDB_id=381740 HC362_RS22245 WP_209263156.1 5085023..5085682(+) (clpP) [Streptomyces sp. 891-h]
MTSFQTGPRAEFTGIAPESRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
VYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARILIHQPYSETGRGQVSDLEIAA
NEIQRMREQLEEMLTKHSTKDREIISNDIERDKILTAEESLEYGLIDQIVSTRKTSVGV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=381740 HC362_RS22245 WP_209263156.1 5085023..5085682(+) (clpP) [Streptomyces sp. 891-h]
ATGACCTCATTCCAGACGGGCCCCCGGGCCGAGTTCACCGGCATCGCGCCCGAGTCCCGCTACGTCGTGCCGCGCTTCGT
CGAGCGCACCTCGCAGGGCGTGCGGGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGAGTGC
AGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCG
GTCTACATCAACTCGCCGGGCGGTTCGTTCACGGCGCTGACCGCCATCTACGACACGATGCAGTTCGTCAAGCCGGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCAGCGGCTGCCGTGCTGCTTGCCGCGGGCACCCCCGGCAAGCGGATGGCGC
TGCCGAACGCCCGCATCCTGATCCACCAGCCCTACAGCGAGACCGGGCGCGGTCAGGTCTCCGACCTGGAGATCGCGGCC
AACGAGATCCAGCGGATGCGCGAGCAGCTGGAGGAGATGCTGACCAAGCACTCCACCAAGGACCGCGAGATCATCTCGAA
CGACATCGAGCGCGACAAGATCCTCACCGCTGAGGAGTCGCTGGAGTACGGCCTGATCGACCAGATCGTCTCCACCCGGA
AGACCTCCGTGGGAGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

86.758

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

85.845

0.416
  clpP Streptococcus mutans UA159

45.361

88.584

0.402
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

87.215

0.397
  clpP Streptococcus pyogenes MGAS315

45.263

86.758

0.393
  clpP Streptococcus pyogenes JRS4

45.263

86.758

0.393
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

87.215

0.388
  clpP Streptococcus thermophilus LMG 18311

43.814

88.584

0.388
  clpP Streptococcus thermophilus LMD-9

43.814

88.584

0.388
  clpP Streptococcus pneumoniae R6

44.041

88.128

0.388
  clpP Streptococcus pneumoniae Rx1

44.041

88.128

0.388
  clpP Streptococcus pneumoniae TIGR4

44.041

88.128

0.388
  clpP Streptococcus pneumoniae D39

44.041

88.128

0.388